Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1310 ATGGCCACCGAAGAACCCATCATCGCCGTTGAACCCGTGTCCGAACCAGCAACCGCCGAACCTCCGGTCTTGGAGGAAGTGGATGAACCAAAGGCCGAAGCTGAGAAGACGAAGAAAGTCAAGGAAACCAAACCTAAGAAAGCTTCCAAACCACGAAACCCTGCTTCCCATCCTACTTACGAAGAGATGATTAAGGATGCAATAGTGTCGTTGAAGGAGAAGAACGGTTCGAGCCAATACGCGATTGCGAAATTCATTGAAGAGAAACAGAAACAGCTTCCTGGAAACTTCAAGAAGCTATTGCTCCAAAATTTGAAGAAGAATGTTGCTTCTGGAAAGCTTACTAAGCCTAAAATCGTTGCTAAGCCTAAAGCAGCTGTGAAACCGAAGCCCAAGGCAAAGCCTGCAAAGGTTGCAAAGACATCGACGAAGACGACACCAGGAAAGAAAGTTGCTGTTGGGAAGTCTGCTCCTAAGAAAGTAGCTGCTGCAAAGAAAGCTCCGGTGAAGAGTGTGAAGCCTAAAACCGTTAAGTCTCCAGCGAAGAAGGCTTCTGGGTTGAAGAGAGGGGGAAGGAAATGA 582 0.4742 MATEEPIIAVEPVSEPATAEPPVLEEVDEPKAEAEKTKKVKETKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPGNFKKLLLQNLKKNVASGKLTKPKIVAKPKAAVKPKPKAKPAKVAKTSTKTTPGKKVAVGKSAPKKVAAAKKAPVKSVKPKTVKSPAKKASGLKRGGRK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1310 193 SUPERFAMILY "Winged helix" DNA-binding domain 53 134 IPR036390 -
Psa6g1310 193 Gene3D - 51 141 IPR036388 -
Psa6g1310 193 PANTHER HISTONE H1.1 116 193 - -
Psa6g1310 193 PANTHER HISTONE H1.1 2 118 - -
Psa6g1310 193 MobiDBLite consensus disorder prediction 123 193 - -
Psa6g1310 193 MobiDBLite consensus disorder prediction 123 137 - -
Psa6g1310 193 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 131 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1310 193 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1310 193 CDD H15 54 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1310 193 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1310 193 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1310 193 PRINTS Histone H5 signature 143 157 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1310 193 PRINTS Histone H5 signature 173 190 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1310 193 PANTHER HISTONE H1 116 193 - -
Psa6g1310 193 PANTHER HISTONE H1 2 118 - -
Psa6g1310 193 MobiDBLite consensus disorder prediction 24 42 - -
Psa6g1310 193 Pfam linker histone H1 and H5 family 57 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1310 193 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1310 Psa-Chr6 58130622 58132243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1310 43 157 Single Myb Histone (SMH) Gene Family AT1G72740 28.099 8.44e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1310 K11275 - gmx:100775944 143.28