LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g1308	ATGAAAGACATATTTGAAAAGCAATCATCATCATCACCTCAAGCTTCAAATTATGCATCAAGTAGTGGCTTATCTGGGGATGATAAAGAGATTGGTTATAGAGCTTCAATTACATCAAAGCATCCATATCTTTTGGCCAAAAACTCTTATCTTCTTCATTTCTTATCCAACAAAATTGACCGAAATTTCGCTCGCATGGTAATGGCAGAGGTGTTAGGTACTTTCATATTGATGTTTTGTGTATGTGGAATCATTGCAAGCACACAACACCAAAACAATGCAGTGGGTCTTCTAGAGTATGCAACTACAGCAGGATTAACAGTGGTTGTGATAATTTTCTCTATTGGCCAAATTTCTTGTGCACATGTTAATCCAGCTATCACAATAGCCTTTGCAACAATTGGTCAATTTCCATGGTTCAAGGTTCCAATTTACATAATAGCACAAACAATAGGTTCTTTGATGGCAACATATATTGGTAGTCTTGTGTATGGCATAAAATCAGATGTTATGATGACTCAACCACTCCAAGGTTGTAACTCTGCGTTCTGGGTGGAGCTTATTGCATCATTCATCATCATGTTTTTGGTTACAGCTTTGACATCGGAACCTCAATCTGTGGGACATTTATCTGGTTTTGTTGCTGGAATTGCAATTGGGCTTGCTGTACTAATCACAGGACCTGTTTCAGGCGGATCAATGAATCCAGCAAGATCACTAGGTCCTGCAATTATGTCATGGAAATTTAAGGACATATGGATATACATTCTAGCCCCAAATTTAGGAGCTGTGGCAGGAGCACAAATGTTTCGTTTCCTACGTCTTCAAGACCAACATTGCAATTCCCCAAACATGAGTGAAGTTGGTCATCCAATACCCTTTTGTGCAAAGTATAATGGCAAGCCTAGTGTCACACAGATCTTGGTGGCCTCTTCCATTGGGTTGATGATTGCTGCAGCAATGCATTATCGCCTAAAAAAGTTTCGAGATCGAAAGATCATTCCGCGTTTGAGATTATCAAAGTCTGGCCAAACTCCGAAACTTGAGAGATTCTCTCATTACGTAGCTAGACAAATGGGGTTCAGAGATAAAAGGAACTGTCCTAATTTATGTAAATTGGCTTCTGAATACATAAGAAAATCTGATGGATGTGAAGATGATATCTATGCTTTCTTTGAAAATGAACAAAATGCTGACTCACTTTTTGTTAAACTTGTGGAGGAGTTTGAGAGATGTATTCTTAGTTACTTTGCATTCCATTGGAGCCTTGGTGATTTATTGATAAGTCAGGTCTTGAGCTCTGACACTGAGCCAAAAAAGAAGTTCAAACACATAGTTATGGCAGCAACTAGGGATCAAAGGGTTGAAAGGGTAACAAAGAATTTGAAGGTGGCTAGAGTTTTCAATACATTAGTAGAAGAGATGAGAGCAATGGGACTTGTATCGAATGATGACAACCGATGCACAGAGGTTATGGCTCCGGTGGCTCACAGTGATAGGAGTCCTGTCCTCCTTTTCATGGGTGGTGGTATGGGAGCAGGGAAGAGCACCGTCCTTAAAGACATTCTCAAAGAGCCTTTTTGGGTAGGAGCAGCTAACAATGCTGTTATCATTGAGGCAGATGCATTCAAAGAATCAGATGTTATCTATAGAGCCCTTAGCTCAAGAGGTCATCATGACATGATTCGAATGGCTGAATTGGTACACCAATCGTCAACAGATGCGGCCTCATCGCTCCTGGTAACAGCATTGAATGAAGGGAGAGACGTGATTATGGATGGAACATTCTCTTGGGTACCATTTGTTGTGCAAACAATAACAATGGCTAGGAATGTTCACCGACGTCGTTACCGAATGGGAGCTGGTTACAAAGTGAATGGTGATGGAACAACAACAGAGAGTTATTGGGAAAGAATTGAAAATGAAGAACCTGAACAAATTGGCGGCAAAAAGAGGAAACCATATAGAATAGAGCTTGTTGGAGTAGTATGTGATGCTTACCTTGCTGTTATTAGAGGCATAAGGAGAGCTATCATGTGTAGAAGAGCAGTAAGAGTGAAGTCACAACTGAAATCACACAAGAGATTTGCAGATGCATTTATGACTTATTGCCAACTAGTAGATAATGCAAGGCTATACAGCACAAATGCTTTAGAAGGCCCACCCAAATTGATAGGATGGAAAGACAGAGACAAGACATTGCTAGTTGATCCAGATGAAATTGATTGTTTAAAGAGAGTTGCTAGGTTGAATGAAGATGCTGATTCTATATATGAACTTTACAAGCACCCTAACCCAACATGTGAAGCAGGATCTATATGGAAAGACATTGTGTTATCTCCTTCAAGGTTGAACATCCAACAGGAGCTCAAGTATTCAATTCAAAAGGTTGAGAGATTTTCATGCCAGAATGCTCCCTTGACGTTGGAGCAGTGA	2436	0.4011	MKDIFEKQSSSSPQASNYASSSGLSGDDKEIGYRASITSKHPYLLAKNSYLLHFLSNKIDRNFARMVMAEVLGTFILMFCVCGIIASTQHQNNAVGLLEYATTAGLTVVVIIFSIGQISCAHVNPAITIAFATIGQFPWFKVPIYIIAQTIGSLMATYIGSLVYGIKSDVMMTQPLQGCNSAFWVELIASFIIMFLVTALTSEPQSVGHLSGFVAGIAIGLAVLITGPVSGGSMNPARSLGPAIMSWKFKDIWIYILAPNLGAVAGAQMFRFLRLQDQHCNSPNMSEVGHPIPFCAKYNGKPSVTQILVASSIGLMIAAAMHYRLKKFRDRKIIPRLRLSKSGQTPKLERFSHYVARQMGFRDKRNCPNLCKLASEYIRKSDGCEDDIYAFFENEQNADSLFVKLVEEFERCILSYFAFHWSLGDLLISQVLSSDTEPKKKFKHIVMAATRDQRVERVTKNLKVARVFNTLVEEMRAMGLVSNDDNRCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWVGAANNAVIIEADAFKESDVIYRALSSRGHHDMIRMAELVHQSSTDAASSLLVTALNEGRDVIMDGTFSWVPFVVQTITMARNVHRRRYRMGAGYKVNGDGTTTESYWERIENEEPEQIGGKKRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVKSQLKSHKRFADAFMTYCQLVDNARLYSTNALEGPPKLIGWKDRDKTLLVDPDEIDCLKRVARLNEDADSIYELYKHPNPTCEAGSIWKDIVLSPSRLNIQQELKYSIQKVERFSCQNAPLTLEQ*	812

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g1308	811	Pfam	Major intrinsic protein	62	269	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Psa6g1308	811	CDD	MIP	65	273	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Psa6g1308	811	Gene3D	-	485	723	IPR027417	-
	Psa6g1308	811	SUPERFAMILY	Aquaporin-like	61	279	IPR023271	-
	Psa6g1308	811	Gene3D	Glycerol uptake facilitator protein.	45	287	IPR023271	-
	Psa6g1308	811	MobiDBLite	consensus disorder prediction	7	23	-	-
	Psa6g1308	811	MobiDBLite	consensus disorder prediction	1	23	-	-
	Psa6g1308	811	PANTHER	UNCHARACTERIZED	296	804	IPR044802	-
	Psa6g1308	811	ProSitePatterns	MIP family signature.	122	130	IPR022357	-
	Psa6g1308	811	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	497	632	IPR027417	-
	Psa6g1308	811	Pfam	Zeta toxin	496	609	IPR010488	GO:0005524\|GO:0016301
	Psa6g1308	811	PRINTS	Major intrinsic protein family signature	65	84	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Psa6g1308	811	PRINTS	Major intrinsic protein family signature	104	128	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Psa6g1308	811	PRINTS	Major intrinsic protein family signature	141	160	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Psa6g1308	811	PRINTS	Major intrinsic protein family signature	185	203	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Psa6g1308	811	PRINTS	Major intrinsic protein family signature	216	238	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Psa6g1308	811	PRINTS	Major intrinsic protein family signature	253	273	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Psa6g1308	811	PANTHER	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	296	804	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g1308	Psa-Chr6	58046634	58055071	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g1308	67	278	Major Intrinsic Protein MIP	AT5G37820	38.967	7.57e-50	176

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g1308	-		-	mtr:MTR_1g070385	1487.24

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa6g1308	6	58046634	58055071	Psa6g1308	6	58046634	58055071	ECH