Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1297 ATGGAGGACATTTGGGCTAAGGAAATGGAGCTGCTAGACTTTGCAGGGACATACCAATTGGGTGGACCGTTAGTACTGAAAGCACTGTGGGAGGAAGAGTTCAATGTTATTAGTCGGCTTCTCAAGCTCATACTTGAGGACAAATATGTTTTTCTAGTGGCAAGCAGTGATAGGACACAGTTTGGCCTAAGCCCAACAACTAAGCTGAATAGGGAAGTTGGAGAGGAATTGATTATATGCATGTTTCCCAAATCAACTCATGAAACATTTTCACAAAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAACCTAAATTGGCACGCTCAGACTTCACTATTGTTCATTATGCAGGGGAGGTCAAGTATCAATCTGAGCACTTCATAGACAAAAACAAAGACTATGTTGTTCCCGAACATCAAGACATGCTAAGTACTTCTAAATGTTCATTTGTATCTGGCCTTTTTCCTCCACTCTCTGAGGAGACAGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTTAAGCTACAATTACAACATTTGATGGAAGCGCTCAATCTGACAGAGCCCCACTATATTAGATGTGTGAAGCCGAATAGTCAATTAAAACCTGGGATATTTGAGCATATGAACGTCATGCATCAATTACGTTCTGGTGGTGTTCTTGAAGCAGTGAGGATTAAATGTGCTGGATTCCCCACTCACAGGACCTTTCAGGAATTTTTAACTCGACTAGGCATTCTTGCTCCAGAGACCATTCACGGAAACTTCGAAGAAATGGAATCATGTAAAAAGATTTTAGAGAAGGTTGGGCTGACAGGTTATCAGATAGGAAAAACAAAAATATTCCTTAGAGCTGGTCATATGGCAGAGTTGGATGCTCGGAGAGCATACATGCTTAGCAGTTCTGCAACAATTATCCAAAAGCAGACTAAAAGTTATTTTAGCCGGAAAACATATCTTACACTACGAAAGTCCTCTATCTTTGTACAATCTATTTGCAGAGGAGAACTGGCACGAAGACAATATTATCACCTGAAGAGGAAAGCAGCTGCCATCAAAATTCAAACCAATTCACGTGGAAGATTTGCCAGAAAATGCTACTTTGAATTAAGGATTTCTGCCATTGTCTTACAGACAGGTTTTCGGGCTATGGCTGCTCGACATGCTCGTGATAAATTGAGATATAGAAAGCAAACTAGGGCATCAACTATTATCCAGTCCTATTGGCGGCGACATAAAGCTCTCATTGACTATCAGAACCTAAAGAAAGCATCAGTCATTTCACGAAGTGTCAATCACTCCAGCGATGAACATGAACAGAAGATTGCCGAGATATCACCGGAAAATGAAAGTCCTTCCGTGGAAAAATCTTCAAATTTATTACATGAAGAATCCTCAAGTTCTTTCCAAGATAATGAAAGCATTGAAGCTATCAGGATTTTCTCTAATCCCCTCAGAGATACTGAAAGCAATGAAGCTAGTATGGATATCTCTAGTCCCCTCCAAGACACTGAAAGCAATGAAGCTATTAGGGATTTATCTAGTCCCCCCAGAGACACTGGAAGCAATGAAGCTATTAGGGATTTATCTAGTCCCCTCAGAGACACTGAAATCAATGAAGCTACTAGTGATTTATCTAGTTCCCTCAGAGACACTGAAAAGATTGAGGTTCTTTCTGCAGAAATAAAAAATTTAAAGGTCATGTTGAAGGAAGAAAAACAAAAAACTGATGAATATGAAAGGAAATATGTAGAAGCTCAAGGATCTAGTGAAGAGTTACGCAAAAAGTTATCCGAAACTGAAAAAAGAGTATATCAGCTTCAGGACTCATTGAACAGTGTGTATCAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGACGATCTTAAGTACTTCATCAAGGTTGAGTTCAACTTTTCGGCCTATTGCTAG 1956 0.3967 MEDIWAKEMELLDFAGTYQLGGPLVLKALWEEEFNVISRLLKLILEDKYVFLVASSDRTQFGLSPTTKLNREVGEELIICMFPKSTHETFSQKLYQTFKDHKRFIKPKLARSDFTIVHYAGEVKYQSEHFIDKNKDYVVPEHQDMLSTSKCSFVSGLFPPLSEETAKSAKFSSIGSRFKLQLQHLMEALNLTEPHYIRCVKPNSQLKPGIFEHMNVMHQLRSGGVLEAVRIKCAGFPTHRTFQEFLTRLGILAPETIHGNFEEMESCKKILEKVGLTGYQIGKTKIFLRAGHMAELDARRAYMLSSSATIIQKQTKSYFSRKTYLTLRKSSIFVQSICRGELARRQYYHLKRKAAAIKIQTNSRGRFARKCYFELRISAIVLQTGFRAMAARHARDKLRYRKQTRASTIIQSYWRRHKALIDYQNLKKASVISRSVNHSSDEHEQKIAEISPENESPSVEKSSNLLHEESSSSFQDNESIEAIRIFSNPLRDTESNEASMDISSPLQDTESNEAIRDLSSPPRDTGSNEAIRDLSSPLRDTEINEATSDLSSSLRDTEKIEVLSAEIKNLKVMLKEEKQKTDEYERKYVEAQGSSEELRKKLSETEKRVYQLQDSLNSVYQDDIFHVKSSCRAEDDLKYFIKVEFNFSAYC* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1297 651 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 80 644 - -
Psa6g1297 651 MobiDBLite consensus disorder prediction 434 477 - -
Psa6g1297 651 ProSiteProfiles IQ motif profile. 403 430 IPR000048 GO:0005515
Psa6g1297 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 429 IPR027417 -
Psa6g1297 651 SMART iq_5 303 325 IPR000048 GO:0005515
Psa6g1297 651 SMART iq_5 374 396 IPR000048 GO:0005515
Psa6g1297 651 SMART iq_5 326 348 IPR000048 GO:0005515
Psa6g1297 651 SMART iq_5 402 424 IPR000048 GO:0005515
Psa6g1297 651 SMART iq_5 351 373 IPR000048 GO:0005515
Psa6g1297 651 SMART MYSc_2a 6 302 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g1297 651 Gene3D - 542 634 - -
Psa6g1297 651 ProSiteProfiles IQ motif profile. 352 376 IPR000048 GO:0005515
Psa6g1297 651 Pfam IQ calmodulin-binding motif 328 347 IPR000048 GO:0005515
Psa6g1297 651 Pfam IQ calmodulin-binding motif 354 372 IPR000048 GO:0005515
Psa6g1297 651 Pfam IQ calmodulin-binding motif 404 419 IPR000048 GO:0005515
Psa6g1297 651 Pfam Myosin head (motor domain) 80 289 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g1297 651 Gene3D - 235 302 - -
Psa6g1297 651 Gene3D Myosin VI head, motor domain, U50 subdomain 137 170 - -
Psa6g1297 651 ProSiteProfiles Myosin motor domain profile. 80 301 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g1297 651 Gene3D Kinesin motor domain 193 231 IPR036961 -
Psa6g1297 651 Gene3D - 354 404 - -
Psa6g1297 651 Gene3D - 303 353 - -
Psa6g1297 651 Gene3D - 80 192 - -
Psa6g1297 651 ProSiteProfiles IQ motif profile. 327 356 IPR000048 GO:0005515
Psa6g1297 651 MobiDBLite consensus disorder prediction 451 477 - -
Psa6g1297 651 MobiDBLite consensus disorder prediction 491 551 - -
Psa6g1297 651 Coils Coil 560 615 - -
Psa6g1297 651 PANTHER MYOSIN 80 644 - -
Psa6g1297 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 354 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1297 Psa-Chr6 56937973 56947534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1297 80 616 Myosins gene family AT1G54560 47.143 1.48e-165 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1297 K10357 - gmx:100803485 650.203