Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1292 ATGGGTACCAATTTACATCAACTACTAAGAAGTCTCTGTTTGGATACTGATTGGAAGTATGCTATCTTTTGGAAGCTACGACAACACTGTGCTAGGATGATCTTGAAATGGGAGGATGTTTACTATGACAATCTTGATAATTGTGATTCTTCACAAAGTATGCACTGCCAGAAAAACTTGGATCAGATCTGTGGCGGAAACTTTTCAAACGACCCTCTAGGATTATCTGTCGCAAAGATGTCGTATCATGTATATTCCTTAGGGGAAGGTATTGTTGGACAAGTAGCTGTTAATGGAAATCATCAATGGATCTTTGCAGATAATCTAGTTACATGTTCCGGCCCATCTTTTAAGACAATTGTTGTTGTAGCTGTAGTCCCACTTGGAGTTGTTCAACTCGGCTCTTTAAATAAAGTTAGTGAAGACATGGGGTTAGTAACACATATCAGAAGTCTCTTTTTGTCTACTCGTGATCAAACATCAGGTTACCTTCCTAGTCAAATCCAAACTGTGAAACATGACACGCAGAAAACCATGATGGGTGAAACATCGGATAGGTTAATGCCCTTTCAATGTCCTGGGAAGAACTACTCACCTCCTGCTGTTTATCAGAAAACGACTGTTGATGCCAGGCACGGAGGGCTTGAAATTTACAGTGATCAAAGTTCCGTTTTGCTTCAGTCAATGTCAAATATGATGACTGCAGAGAATCGGAAACTAGAAGGGGTGAGGCCTTCAAACGAAAGGAAGTGTGAAGGGAACAACAATAGCTTCAAAGATACTAGTTTGAAATCAGACAAAAATGTCTCATCGGTTTTTCACAATTCAGTTATGGATAGTAATTGTAATAGTGCCAATGTTTTAATAAGTCCATACGTTAGAGATGATACTGAGATGTCAACGATTCAGACTGAGTCTTATTACGAGGATATCTCATACGCGTTGAAATTTCCTGCTGGCTATGAGCTACACGAAGCACTTGGACCAGGTTTTCTGAAAGAGAGTAAATATTTTGACTGGGCAGTACAGGGAAATCAAGACGGTAAAGATGCTGAGATGTCGGACGAGTTTAGCTGCAGCCAGTTGACTTGTGAATCTCGTCCGGAGCATCTTTTGGAAGCAGTGGTGACCAACGTTTGCCATAGTAATAATATTGTTGATAACGAGTTATCATTTTCTACATCAGTTCACGATGCAACGGTCTCTGGAAGAAATCCCGAAGTTCCTATTCTTAATGTTGGCACTATTAATTCAGAAGGCTATTCAATCGATCAACCATCTCACGTTAAAGAGAAAAACCATAATCGGAGTTTGAGTTCATCAGGAATATGCGGTGTGATATCCCCCAAAAGCTTTTCTTCTGCGTGTCCTAGTTCGTGTAGTAACCAGTTTGAGAGGTCTTCTGAACCATCTAAAAACAGCAAAAAGAGGGCTAGGCCCGGGGAGAGTTGTAGGCCTAGACCAAGGGACAGACAACTGATCCAAGACCGTATTAAGGAGTTACGAGAGCTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCACTTTTGGAGTGCACAATAAAGCATATGCTCTTTCTCCAAAGCATAACTAAGCATGCTGACAAGCTACATAAAACAAAGACAAAGTTGCATGATCACATGGAAAAAGACATTCATGGATCGTCTGGTTATCAACAGGGTTCAAGTTGGGCAATGGAGGTAGGAGGTCATCTGAAGGTTCATTCAATATTAGTAGAAAATCTTAGCAAGAACGGGCAGATGCTTGTTGAGATGCTTTGTGAAGAGTGCAGCCATTTTCTTGAGATAGCAGAAGCCATGAGAAGCTTGGGCCTGAAAATTTTGAACGGCATAACTGAAGCTCGTGGTGAGAAGACATGCGTATCTTTTGTGGTTGAGGGACAAAACAACAGAAATCTACATAGATTGGATATCCTGTGGCCCCTTGTTCAATTATTGCAGTCAAAGAGCACAATGAATGCATGA 1986 0.4099 MGTNLHQLLRSLCLDTDWKYAIFWKLRQHCARMILKWEDVYYDNLDNCDSSQSMHCQKNLDQICGGNFSNDPLGLSVAKMSYHVYSLGEGIVGQVAVNGNHQWIFADNLVTCSGPSFKTIVVVAVVPLGVVQLGSLNKVSEDMGLVTHIRSLFLSTRDQTSGYLPSQIQTVKHDTQKTMMGETSDRLMPFQCPGKNYSPPAVYQKTTVDARHGGLEIYSDQSSVLLQSMSNMMTAENRKLEGVRPSNERKCEGNNNSFKDTSLKSDKNVSSVFHNSVMDSNCNSANVLISPYVRDDTEMSTIQTESYYEDISYALKFPAGYELHEALGPGFLKESKYFDWAVQGNQDGKDAEMSDEFSCSQLTCESRPEHLLEAVVTNVCHSNNIVDNELSFSTSVHDATVSGRNPEVPILNVGTINSEGYSIDQPSHVKEKNHNRSLSSSGICGVISPKSFSSACPSSCSNQFERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLQSITKHADKLHKTKTKLHDHMEKDIHGSSGYQQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAEAMRSLGLKILNGITEARGEKTCVSFVVEGQNNRNLHRLDILWPLVQLLQSKSTMNA* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1292 661 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 153 IPR025610 -
Psa6g1292 661 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 478 527 IPR011598 GO:0046983
Psa6g1292 661 MobiDBLite consensus disorder prediction 469 492 - -
Psa6g1292 661 MobiDBLite consensus disorder prediction 463 492 - -
Psa6g1292 661 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 170 IPR043561 GO:0003700|GO:0006355
Psa6g1292 661 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 298 659 IPR043561 GO:0003700|GO:0006355
Psa6g1292 661 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 171 285 IPR043561 GO:0003700|GO:0006355
Psa6g1292 661 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 171 285 - -
Psa6g1292 661 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 170 - -
Psa6g1292 661 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 298 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1292 Psa-Chr6 56644575 56648467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1292 255 657 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 44.755 3.56e-88 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1292 - - cam:101504684 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1292 6 56644575 56648467 Psa6g1292 6 56644575 56648467 ECH
Psa3g1373 3 122982358 122988944 Psa6g1292 6 56644575 56648467 PCT