Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1288 ATGGAAGGAGAAAAATCAAAGAAAGAAGAGAATGCGAAACAAGAGTCGCCAAAAGAAATTCGATACCGAGGAGTGAGACGTCGTCCGTGGGGAAAGTACGCGGCCGAGATTCGTGACCCGGCTCGTCGTGGTACGCGCGTGTGGCTAGGCACATTTCTCACCGCGGAGGAAGCCGCAAGAGCTTATGACCGCGCCGCGTTTGAAATGAGAGGCGGTTTAGCCATTCTCAATTTTCCACATGAGTACCCTTCTATGAACTCTTCAACATCATTACTAGGACCTAATTTACCTTCATCTTCTTGCTCTGAATCAAGTTATCAATATGAGCATGGAAAAGAAGTTATTGAGTTTGAATGTTTGGATGATAAATTGTTGGAAGATCTTCTTGATTGTGATCAGAGTGAAATTACTACTCACAAAAACTTGCCTAAGTAG 435 0.4414 MEGEKSKKEENAKQESPKEIRYRGVRRRPWGKYAAEIRDPARRGTRVWLGTFLTAEEAARAYDRAAFEMRGGLAILNFPHEYPSMNSSTSLLGPNLPSSSCSESSYQYEHGKEVIEFECLDDKLLEDLLDCDQSEITTHKNLPK* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1288 144 PANTHER ETHYLENE RESPONSE FACTOR 11 133 - -
Psa6g1288 144 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Psa6g1288 144 MobiDBLite consensus disorder prediction 1 21 - -
Psa6g1288 144 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Psa6g1288 144 PANTHER DNA-BINDING DOMAIN 11 133 IPR044808 GO:0003700|GO:0009873
Psa6g1288 144 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Psa6g1288 144 SUPERFAMILY DNA-binding domain 21 81 IPR016177 GO:0003677
Psa6g1288 144 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Psa6g1288 144 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
Psa6g1288 144 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Psa6g1288 144 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1288 Psa-Chr6 56522716 56524088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1288 18 133 AP2-EREBP Transcription Factor Family AT3G23230 58.678 2.97e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g1288 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1288 - - gmx:100810414 174.096