Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1285 ATGCACCTAACTTTTAAGGCCATCACATATCTCATATTCACATCTTTCATCATGGCACTAAACAAGGACCAAATCTACAACCTTGAATATCAAGCTCTCCCACCTATTATCATAACTCAGGATAATACACTTCATCATCGCCCTCCACAGCCTGTTTCAGACTATGCTTTTCCCATATTTGCCATTGTTGTTCTCAGCATCATTGCTGCCATTTTGTTACTCCTCAGCTACATCACTTTTTTAACCAAATTCTGCTCTAACTGGAATCATGTGAATCCAACGAGATGGATTTCGGTTCTTCGAGCTGGATGGAACGATGAAGATCACTTCATAGCATTATCTCCTACATTATGGAACCGGGGATTAGACGAATCGGTCATCAGAGAAATCCCGTCTTTTCAGTTTATAAAAGGTGAATGTGAAGATCAAAGTGTGTATGGTTGTGTGGTTTGTTTGACAGAGTTTCAAGAACAAGATGTGATAAAAATTCTACCAAACTGTAACCATGCTTTTCACTTGGATTGCATTGATATTTGGCTTCAAACAAATTCTAATTGTCCTCTTTGTAGATCAAGCATTTCAGGCAATGCAACAAGTACTCCATTTGACATTATCATAGCTCCAAGCTCTTCTCCTCAGAATTCTTCTCAGTTACTCTCTAACTTAGCAAGTGATGAAGATTTCGTCGTCATCGAATTAGGCGGAGAAGAAAACGAGGTTCAACAAGAAAAAGATGACTCAAGGGGAAGCATAGGACATAGTAGAAAGTATCACTCTACAAGAGAAATGAAACCAAAGTGTCCTTATGTTTCCATCATGGGAGATGAGTACACTGATATAATCAGAAAGAAAGATGACTTGTTTTCGATTCAACCGATTCGAAGATCTTTCTCATTGGATTCTGCAAATGATAGACAAATGTTCATGGATGTTCAAGCCATTATACAACAAAATGAAGCTAGTGCAAGTGAGGATTGTAATAGCAGAAATAAAAGTGCATTCTTTCCATTTTGTTACTATGGAAAGGGATACAAAAATGCAATCCTTCCATTTGGAGAATGA 1062 0.3776 MHLTFKAITYLIFTSFIMALNKDQIYNLEYQALPPIIITQDNTLHHRPPQPVSDYAFPIFAIVVLSIIAAILLLLSYITFLTKFCSNWNHVNPTRWISVLRAGWNDEDHFIALSPTLWNRGLDESVIREIPSFQFIKGECEDQSVYGCVVCLTEFQEQDVIKILPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNATSTPFDIIIAPSSSPQNSSQLLSNLASDEDFVVIELGGEENEVQQEKDDSRGSIGHSRKYHSTREMKPKCPYVSIMGDEYTDIIRKKDDLFSIQPIRRSFSLDSANDRQMFMDVQAIIQQNEASASEDCNSRNKSAFFPFCYYGKGYKNAILPFGE* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1285 353 SUPERFAMILY RING/U-box 147 196 - -
Psa6g1285 353 SMART ring_2 148 189 IPR001841 -
Psa6g1285 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 195 IPR013083 -
Psa6g1285 353 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 18 351 - -
Psa6g1285 353 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Psa6g1285 353 MobiDBLite consensus disorder prediction 235 262 - -
Psa6g1285 353 CDD RING-H2_PA-TM-RING 148 190 - -
Psa6g1285 353 Pfam Ring finger domain 148 190 IPR001841 -
Psa6g1285 353 MobiDBLite consensus disorder prediction 237 262 - -
Psa6g1285 353 PANTHER RING-H2 FINGER PROTEIN ATL16 18 351 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1285 Psa-Chr6 56437104 56439850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1285 48 317 C3H Transcription Factor Family AT1G04360 40.823 5.03e-59 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1285 K19041 - gmx:100809883 421.009