Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1282 ATGAGAAATTCGTCAGAAACACCTTCTCCATCCTCATACAAAACCAGATCGAAAAAGCCCCAACTTCGAAGCTCAAAATCTCTATTCAAAGATCCCATTGATGAACTAAGTACGAAAACTCCAGAGAAGCTGCCACCGCGCGCTCGCAACCGTGGGGTTGCGCTTTCTTTATCGGATATTCGGAAAGTTACTAAGAGTCTTCATGATCAGGAACAGCCCCAAACGACGCTATCTAAGGGAAAAAGCGCTAGAAGGAAAATCCCATTGGCTTCCCCGCGTAAGAGCAGTAAATCAGCTGATGAATTACTCAAGCTTCCTGAAAAATATGCAAATTTTGGCGAGTTTTTTGATAGCTTGGATAGTTCGATTCGATTGTTGCGAATGAAAGGATCTACGACTTCGTTCACTAATATCAGGCCAAAGATTGAAACTTTAACTGATAGGAGGTTTACACACGGTCATTTGGCTCAGTTGAAGTTTATCTTACCAGAGGCAATTGCTATCAAGAAGATATTAGTGTTTGATGAAAGAACAAGTTGTATGAAGCCAGATCTTCATGTTACTATAAACCCTGATGCAGTCGAGGTTGATGCCAAGTTGCCATCTGAATCTGAGACTATGTCTCTGAGGAAGTTTTTTCGTGCACGGCTTAGAGATTTCTGGGAATCTCATCCCGAGGGTGATGAAATTCCAGAGGAAATACTGCCGGAGCCATTCAATCGCCCAAAACAAGAGCCTCTTTTACCTGTGTTTAAAGGTCCCATAACATTCTCTGCAGTGAAATTGTCAACTAGTGACAATGCAATTAATACAGACCCTGATGTCTCAGTCCCCAATGAGACATCATTTGAAGCACTTAACCAGCAGCCAGCACCTGTCTCTCATATGCCTCCATCTTTTAGGAGACGGTTTTCTCAGAGAGTGAAGGAAAATGTCCACCCAAAATTTCCATCAGATTCCTTCCAACCTTCCGCTGTCCCATTTTTAGAGTCAAGCTTGAAGATAGATTCCACATCTGAGGTCTCTATGTCCCATCAGAAAACATCCCAATCTGAGCTGGTTTCAGAAGCACCCAGCACTGAAGCATGTTCTACAATTAACTGTTCTTCAATATGCTCCACACCATCCAGTGTTATCCCAGCTACACCTTGTAAGGCCATTGAGTGTACAGACGGCAAAGGTGAATCTGTCAAAAGCCTTGAACCTATGTCAACCCCATTGGGATATGTGTCAACTCCATCCAGGCTGATGTCAGCCACACCTGCCTTGAAGCCACCTAAAAGGCATTTAATGACCCCTGAAGACAATTCTGCAAGCTCACCGGACAAGTTGGTTAAGCGCCCACCTTCATCAAGGTCAACAAGGTCATCAAGGTCTTTGAAATTTGACACTCCAATGAAAAATGAAAATGGTGCTAGCAGTTTATCAAGATCATTGAAACTTGACACTCCAATGAAAAATGAAAATGATGCTAGCAGGTTATCAAGATCATTGAAATTTGACACTCCAGTGAAAAATGTAAATGTTGCTAGCAGTTTGTCAACTGATAATGACATTTTTGATATCCTACCAGATACTCTTCTCCATTCGATTAGGGAAAAAGAAAGAATGGCAATAGAGGAAAGGGATCCAGCCATTTCACAAGCTAAGAAACGCAAGAAAATTATTGCCAAGGAAAGGGATCCAGCCATTTCACAAGCTAAGAAACGCAAGAAAATTATTGCCAGTCTTCCCAAGCTCTTCAACATGATTCACATGATGTTTCATTCTAGAAACCGTTCTGTCATCACAAAACAGGAGCTGGTCAACACATTAATCTCAAGCCACTGTGATATTGTTGATAGAAGAGAAGTTGAAGAACAGCTCCATCTGTTGTTAGAATTAGTTCCTGAATGGATTTCTGAGAAGTTGGCTTCCAGTGGAGATAAGCTGTTGGTCTCTGTAAATAAAATGTTGAGCCCTGAATCCATAAGAGCATCACTTGAAGAAGCAAAATGA 1998 0.4174 MRNSSETPSPSSYKTRSKKPQLRSSKSLFKDPIDELSTKTPEKLPPRARNRGVALSLSDIRKVTKSLHDQEQPQTTLSKGKSARRKIPLASPRKSSKSADELLKLPEKYANFGEFFDSLDSSIRLLRMKGSTTSFTNIRPKIETLTDRRFTHGHLAQLKFILPEAIAIKKILVFDERTSCMKPDLHVTINPDAVEVDAKLPSESETMSLRKFFRARLRDFWESHPEGDEIPEEILPEPFNRPKQEPLLPVFKGPITFSAVKLSTSDNAINTDPDVSVPNETSFEALNQQPAPVSHMPPSFRRRFSQRVKENVHPKFPSDSFQPSAVPFLESSLKIDSTSEVSMSHQKTSQSELVSEAPSTEACSTINCSSICSTPSSVIPATPCKAIECTDGKGESVKSLEPMSTPLGYVSTPSRLMSATPALKPPKRHLMTPEDNSASSPDKLVKRPPSSRSTRSSRSLKFDTPMKNENGASSLSRSLKLDTPMKNENDASRLSRSLKFDTPVKNVNVASSLSTDNDIFDILPDTLLHSIREKERMAIEERDPAISQAKKRKKIIAKERDPAISQAKKRKKIIASLPKLFNMIHMMFHSRNRSVITKQELVNTLISSHCDIVDRREVEEQLHLLLELVPEWISEKLASSGDKLLVSVNKMLSPESIRASLEEAK* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1282 665 Pfam DNA replication factor Cdt1 C-terminal domain 527 636 IPR032054 -
Psa6g1282 665 Gene3D - 564 665 IPR038090 -
Psa6g1282 665 MobiDBLite consensus disorder prediction 24 46 - -
Psa6g1282 665 SMART CDT1_2 105 237 IPR014939 -
Psa6g1282 665 MobiDBLite consensus disorder prediction 422 494 - -
Psa6g1282 665 PANTHER DNA REPLICATION FACTOR CDT1 15 557 IPR045173 GO:0003677|GO:0030174|GO:0071163
Psa6g1282 665 PANTHER DNA REPLICATION FACTOR CDT1 557 665 IPR045173 GO:0003677|GO:0030174|GO:0071163
Psa6g1282 665 SUPERFAMILY "Winged helix" DNA-binding domain 102 239 IPR036390 -
Psa6g1282 665 Pfam DNA replication factor CDT1 like 105 206 IPR014939 -
Psa6g1282 665 MobiDBLite consensus disorder prediction 433 482 - -
Psa6g1282 665 CDD Cdt1_m 84 243 IPR014939 -
Psa6g1282 665 MobiDBLite consensus disorder prediction 1 98 - -
Psa6g1282 665 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1282 Psa-Chr6 56371812 56375366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1282 404 663 Core DNA Replication Machinery Family AT2G31270 42.803 8.72e-47 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1282 K10727 - jre:108996045 513.072