Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1281 ATGGAAGGAGTTTCAAATTCCACAAATGGAAATGTTGATCAGATAAAGTATAGAGGAATTCGTAGGAGACCATGGGGAAAATATGCTGCAGAGATTCGTGATCCGACAAGAAAAGGAACAAGAATATGGCTTGGAACATTTGATACTGCTGAACAAGCTGCAAGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCTATTCTAAATTTCCCTAATGAATATCAAGTTATCGAACATAGGAAAAGGACTAGAGATATTGCTAGTGCTAAAGTAGAACTGAGGCAGTCCAAAGTCGAAGAAACTCCCACAAAACCCACACAAGGAAAATGCTCATATTGGTCAAGGCATGTGATTTGGCTCTTGAAGATGTTTTGGAGGCTTAAAAGCAATGGAAGCACAAGAAATGAAGTTTCTTGA 426 0.3897 MEGVSNSTNGNVDQIKYRGIRRRPWGKYAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQVIEHRKRTRDIASAKVELRQSKVEETPTKPTQGKCSYWSRHVIWLLKMFWRLKSNGSTRNEVS* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1281 141 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Psa6g1281 141 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Psa6g1281 141 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Psa6g1281 141 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Psa6g1281 141 PANTHER DNA-BINDING DOMAIN 7 108 IPR044808 GO:0003700|GO:0009873
Psa6g1281 141 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 7 108 - -
Psa6g1281 141 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Psa6g1281 141 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Psa6g1281 141 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Psa6g1281 141 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1281 Psa-Chr6 56287918 56292593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1281 14 77 AP2-EREBP Transcription Factor Family AT3G23230 76.562 8.06e-34 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa6g1281 AP2 5.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1281 - - gmx:100779173 134.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1281 6 56287918 56292593 Psa6g1281 6 56287918 56292593 ECH