Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1280 ATGTCTACTTTTTTGTTCACACAAGACATGGATTTTGATTCTTCTTTCTTCCAATACCAAAACCTTAACACCTCTTTTTCAGAACCCTTTTCATGGGACGATTTCTTCATTTTCAATGAAGACATCACCATTCCCTTGAATTTCACCGATCATAACACACAAGAAGTTTCATCCAATTCCAACACTTCAGGTTCTCAAACAAGTACAGAATCACAAGAAGTTTCATCCAATTCTACTCAATTAGCACAATCATCATCATTATCATCACCTAAGAGGCCATATAGAGGAGTTAGGAGAAGACCGTGGGGGAAATTCGCGGCGGAAATAAGAGATTCGACGAGAAACGGCGTTCGAGTTTGGATTGGAACATTTGATACAGCTGAAGAAGCTGCATTAGCTTATGATCAAGCAGCTTTATCAACAAGAGGTTCAATGGCAGTGTTGAATTTTCCTGAACAAGTTGTGAGAGAATCATTGAAAGATATGGTGAATTACAAGTGTTGGGAAAAAGATGGTTCTTCTCCTGTTTTGGCACTTAAGAAGAAACACACTATGAAAAGAAAGTCTAAGGCAAGTAGTAACAAAAAGAGCAAAAGGGTAGAAATGGAAATGGAGAATGTTGTTTCAGAAAATGTTTTGGTGTTGGAAGATTTGGGTTCTGAATATCTTGACCAACTTCTTAGCTTGAGTACTTCTTCTTCTTCTCAAGTGTTTAGCTAA 720 0.375 MSTFLFTQDMDFDSSFFQYQNLNTSFSEPFSWDDFFIFNEDITIPLNFTDHNTQEVSSNSNTSGSQTSTESQEVSSNSTQLAQSSSLSSPKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEEAALAYDQAALSTRGSMAVLNFPEQVVRESLKDMVNYKCWEKDGSSPVLALKKKHTMKRKSKASSNKKSKRVEMEMENVVSENVLVLEDLGSEYLDQLLSLSTSSSSQVFS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1280 239 Gene3D AP2/ERF domain 93 153 IPR036955 GO:0003700|GO:0006355
Psa6g1280 239 SMART rav1_2 93 157 IPR001471 GO:0003700|GO:0006355
Psa6g1280 239 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Psa6g1280 239 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Psa6g1280 239 CDD AP2 94 153 IPR001471 GO:0003700|GO:0006355
Psa6g1280 239 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 231 - -
Psa6g1280 239 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Psa6g1280 239 PANTHER DNA-BINDING DOMAIN 8 231 IPR044808 GO:0003700|GO:0009873
Psa6g1280 239 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700|GO:0006355
Psa6g1280 239 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Psa6g1280 239 MobiDBLite consensus disorder prediction 53 96 - -
Psa6g1280 239 MobiDBLite consensus disorder prediction 53 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1280 Psa-Chr6 56118947 56120157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1280 66 235 AP2-EREBP Transcription Factor Family AT3G23240 53.216 9.45e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g1280 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1280 K14516 - gmx:100780775 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1280 6 56118947 56120157 Psa6g1280 6 56118947 56120157 ECH