Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1270 ATGCATCATATCATGAGTAGTACTTGCTCTCTCTTCCATAACCCAGATTTGGAAATGTTGCAACAAGATCCTGCTAATATTATTCTCTTGGAATCATTTCATCATGTTCATGATCATGATCATGATTTTCTTTCCTTTGACATGGTTGACCAAGGACCAACAAAAACTGAGCTAAACCAACAAGTGAAGAATTCCGAACCGAAAGAAAAATCATATATAGGTGTAAGGAAAAGACCTTGGGGGAAGTTTGCTGCAGAGATTAGAGATACAACAAGAGGAGGAAGAAGGGTTTGGCTTGGAACTTTTGATAGTGCTGAAGAAGCTGCTTTGGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTCATCAATTTTTCTGTCCAAAGGGTTAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAAAAGGATCTTCACCTGCACTTGCACTCAAGGAGAGACACTATAACCAAAGAAAGTTGTCATCAAAAGGTGTAAAGAATAATAATAAATCAGAAAAACAAGATCTATCAGAGGAATCATCATCATCATCATCAAGTGTGTTGGTGCTAGAAGACTTGGGAGTTGAATATCTTGAGCAACTTCTAACTATGTCTGATCATCCAAGTACAAGCAACAACAGCTACTTCTAA 663 0.371 MHHIMSSTCSLFHNPDLEMLQQDPANIILLESFHHVHDHDHDFLSFDMVDQGPTKTELNQQVKNSEPKEKSYIGVRKRPWGKFAAEIRDTTRGGRRVWLGTFDSAEEAALAYDQAAFSMRGNNAVINFSVQRVKESLQEIQYDCRKGSSPALALKERHYNQRKLSSKGVKNNNKSEKQDLSEESSSSSSSVLVLEDLGVEYLEQLLTMSDHPSTSNNSYF* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1270 220 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Psa6g1270 220 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Psa6g1270 220 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Psa6g1270 220 CDD AP2 70 128 IPR001471 GO:0003700|GO:0006355
Psa6g1270 220 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Psa6g1270 220 Gene3D AP2/ERF domain 70 131 IPR036955 GO:0003700|GO:0006355
Psa6g1270 220 PANTHER DNA-BINDING DOMAIN 22 208 IPR044808 GO:0003700|GO:0009873
Psa6g1270 220 MobiDBLite consensus disorder prediction 162 187 - -
Psa6g1270 220 MobiDBLite consensus disorder prediction 162 181 - -
Psa6g1270 220 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Psa6g1270 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 22 208 - -
Psa6g1270 220 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1270 Psa-Chr6 55695901 55697969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1270 37 214 AP2-EREBP Transcription Factor Family AT3G23240 48.404 8.22e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa6g1270 AP2 9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1270 K14516 - gmx:100527364 220.32