Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1269 ATGCCTCAAAGAACGAATCTCTCTTTCTTTCACAACCCAGATTTCAAAATGCAGCAGCAAGACCCTTCTGAAATTTCCTTCGAAACATTTGGTATTAATCATGATAATCTTCCCTTTAGTACGATTGATTTCTCACCGAGTTCACAGACAGTGTTGTCTAAGAACTCGACGAAGTCATCTCGAATTGAAGAAGTATTGCAGAATAATAAGATGGATCAAAAGTCATATATAGGTGTAAGAAAAAGGCCTTGGGGGATGTTTGCTGCAGAGATCAGAGATACAACAAGAGGAGGAAGAAGGGTTTGGCTTGGAACTTTTGATAGTGCTGAAAAATCTGCTTCGAAATAA 348 0.3851 MPQRTNLSFFHNPDFKMQQQDPSEISFETFGINHDNLPFSTIDFSPSSQTVLSKNSTKSSRIEEVLQNNKMDQKSYIGVRKRPWGMFAAEIRDTTRGGRRVWLGTFDSAEKSASK* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1269 115 Gene3D AP2/ERF domain 74 115 IPR036955 GO:0003700|GO:0006355
Psa6g1269 115 SUPERFAMILY DNA-binding domain 75 113 IPR016177 GO:0003677
Psa6g1269 115 Pfam AP2 domain 75 112 IPR001471 GO:0003700|GO:0006355
Psa6g1269 115 ProSiteProfiles AP2/ERF domain profile. 75 115 IPR001471 GO:0003700|GO:0006355
Psa6g1269 115 CDD AP2 74 113 IPR001471 GO:0003700|GO:0006355
Psa6g1269 115 SMART rav1_2 75 115 IPR001471 GO:0003700|GO:0006355
Psa6g1269 115 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 41 113 - -
Psa6g1269 115 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Psa6g1269 115 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Psa6g1269 115 PANTHER DNA-BINDING DOMAIN 41 113 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1269 Psa-Chr6 55655311 55656891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1269 37 113 AP2-EREBP Transcription Factor Family AT3G23240 47.619 1.87e-17 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g1269 AP2 1.2e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1269 K14516 - gmx:100811486 110.923