Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1260 ATGGCAACCAGAAGATATGAGTTTGGAAGAATGGATGAAGCAAACCATCCAGACTCCATAAGAGCAACCGTAGCTGAATTCTTCTCCACTTGCATCTTTGTCTTTGCTGGAGAAGGCTCCGCCCTTGCTCTAAGGAAGATATATAGGGATGAAGGTGCATCATCAGGTGAACTAGTGGTACTTGCACTAGCACATGCTTTCTCACTATTTGCCGCTATTTCTGCTAGCATGCATGTATCAGGTGGCCATGTGAATCCTGCTGTCACTTTTGGTGCTCTTATTGGTGGTAGAATCTCAGTTCTTAAAGCTGTTTATTACTGGATTGCTCAGCTTCTTGGTTCTGTTGTAGCTTCTCTCTTATTGAGGCTTGTCACTAACAACATGAGACCACAGGCCTTCAATCTGGCGATAAATGTTGGTGCTGGGCACGGGCTACTACTTGAGATTGCGATGACATTCGGTTTAATGTATGTTGTATATGCTACTGCCATTGATCCCAAAAGAGGCATCATTGGCTCAATTGCACCCTTAGCAATTGGACTTGTTGTTGGAGCAAATGTTCTAGCTGGTGGGCCATTTGATGGTGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCTTTGGTGGGCTGGAGATGGGATTACCATTGGATTTTCTGGGCGGGTCCATTGATTGGAGCAGCAATAGCAGCAGTTATATATGAATATATTATGGTTCCAACCGTTCCTTCTTCTCAGACTCATCCTCAACATCAACCTTTGGTTGCTGAAGATTACTAG 780 0.45 MATRRYEFGRMDEANHPDSIRATVAEFFSTCIFVFAGEGSALALRKIYRDEGASSGELVVLALAHAFSLFAAISASMHVSGGHVNPAVTFGALIGGRISVLKAVYYWIAQLLGSVVASLLLRLVTNNMRPQAFNLAINVGAGHGLLLEIAMTFGLMYVVYATAIDPKRGIIGSIAPLAIGLVVGANVLAGGPFDGACMNPARAFGPALVGWRWDYHWIFWAGPLIGAAIAAVIYEYIMVPTVPSSQTHPQHQPLVAEDY* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1260 259 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 259 - -
Psa6g1260 259 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Psa6g1260 259 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g1260 259 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g1260 259 PANTHER AQUAPORIN-8 1 259 IPR034294 -
Psa6g1260 259 SUPERFAMILY Aquaporin-like 13 249 IPR023271 -
Psa6g1260 259 Gene3D Glycerol uptake facilitator protein. 5 246 IPR023271 -
Psa6g1260 259 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g1260 259 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g1260 259 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g1260 259 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g1260 259 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g1260 259 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g1260 259 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1260 Psa-Chr6 54878003 54879334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1260 2 259 Major Intrinsic Protein MIP AT1G17810 67.300 2.20e-117 335