Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1249 ATGGGTCTTAGAGATGTTGGTGCTTCACTTCCACCTGGGTTTAGGTTTTATCCAAGTGATGAAGAATTGGTCCTTCATTACCTTTTGAAAAAAATCACAAATGAGAATGTTATCAAAGGTACCTTAGAGGAAATCGACTTACACACATGCGAACCATGGCAACTCCCCGAAGTGGCTAAGCTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATTCCACAGGCTTTCGAACCAATAGGGCTACGACATGTGGATATTGGAAAGCGACAGGAAAAGATCGAACGGTGTATGATCCAATCACTCGTGAGGTTGTAGGGATGAGGAAGACTTTGGTGTTCTATAGGAATAGAGCTCCTAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTCGCTTGGAAACCCCACATATGCCACCTAAGGAAGACTGGGTATTGTGTAGAGTATTTCACAAAGGAAAAACAGAAAACAATGGAAAGTTAAGTCCACAAGACATGTATGAAACCATAGCTCCATCCTTAACCACCCAAGCCATGCCAATTGGTTACAACTATAACCAATTTGCTCCATTCTCATCATCAATGACAACTCAGCATTACAATCAAAATGATTCATTGTTGAATCTCCTTCAATTATCTAAAGAAACAAACACAAATTGTAGTAGTGTTACTCAAATTAGTCCTAAATGTGATGATGGATATGGATTCTTGTGGGACATGGATTTGGAAGATCATCATGATGGTGTGGAGTCATCAAACTTGGAAGGAATTAGATTCGAGGTTGATAATAATAATAGTAGTATGGTCTTGATATAA 828 0.3925 MGLRDVGASLPPGFRFYPSDEELVLHYLLKKITNENVIKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYSTGFRTNRATTCGYWKATGKDRTVYDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENNGKLSPQDMYETIAPSLTTQAMPIGYNYNQFAPFSSSMTTQHYNQNDSLLNLLQLSKETNTNCSSVTQISPKCDDGYGFLWDMDLEDHHDGVESSNLEGIRFEVDNNNSSMVLI* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1249 275 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Psa6g1249 275 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Psa6g1249 275 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 268 - -
Psa6g1249 275 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Psa6g1249 275 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 268 - -
Psa6g1249 275 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1249 Psa-Chr6 53953491 53957412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1249 9 171 NAC Transcription Factor Family AT1G76420 56.287 5.75e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa6g1249 NAM 4.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1249 - - ccaj:109788642 439.113