Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1246 ATGGAAATGACAATGCCTGTTAGTTTAAGGAACAAGCTTAAGACTCTTTGTGATTATGGTGACGGTTGGTCTTATGCCATTTTGTGGCGGTTTCATCAAACAAATCCTATGTTGTTGAATGTGGAAGAAGCATACTATGAGGAAGAATTAAGAGAAGAGATTCAAAACATGGTTCCACTAGTGCATTTGCTTGGTGAAGGAATTGTTGGTGAAGCTGCTTTCACAGGAAAGTATAGTTGGTTACATTCAGTTAGTTGTGAGGATGATTCTGGTGTGTTTCAACAATTCAACTCTGGAATGATTAAGACAATTGTGGCCATACCTGTCAAACCATTTGGAGTGGCACAGTTTGGATCAAGAAAGAAGGTTTTGGAGACAATGGATTTTTTGGATCAAACACAAAGTTTACTCGAAGAGATAGGTGAAGTCGGGTTATTAAACGGTTCAGAAAATGCAGTTTTATCGATGGATTTTACGAGCGAGGGTATCGATGGATTGCTAGCTTCGTTTTCTGCTGAAAATTCATGTGATTGGAATCTCAGATCGACTAATGATGAAAACTATAAAGATCCGAGAGAAGTTTTTTCTTCTGAAGAAAGGGTGACATCATTAGAATTCGAGGAAAATTCTTGTTTTGATTCATTGTTGCAGCAATTTGTATCTGAAACAATGGCACAAGAAGTTTTGTTTCGAGAAAATATACAAAGTTCGATGGTTAATGTTGCGACAGAAGCTGATTTGCCATCAAGTTCAAATACACTGAATGGAATAATCTCTAATAGTTTAGAGCCGGTCGATATGTTGGAAGAGTTTTTGAAGTTCGGCTCCGTGGATGATCTTTGCGAATGGTTCGATCCTTCTCCAGACGAGACTACTATCTGCAAAACAATGATTCAACTGGAAAACACCCTTTCCGAACCGGTAGAGTTTAATCCTACTCGCTCTGATCCTGGCCTGGCCGAGAAAGAAACATCGGTAGTAATCCATAGTTCCGAGAATGATTTCTTGGACAACACGGAATTTGATTTGGGAAGTGATCAAGGTAGCGAATTGTGGGGGAATTTACTTACACCAATGGTGAATGCTAGTTGTAATGATAATATTGCCTTTTCTGAATGCGTATCCGAGTTAAATACCGGTACACCGACCGATAATACTCGGAAGAGGCTATTCGCAGAGTTAGGAATTGAAGAGCTTTTGAGAGGCGAAGCGAATTACAACAGTCCTTTTAGCAGTTCAAATTTTGAAAACGAGTTATCGTCTAACAAAAAACAGATGGTAGAGTTTTCGCCTACGAAAAGAACTCAAGTTCATTTCGCAAGCCTTACGGGATCAAACTTGATGCATCCGGTTTCCGATTTGGCGGAGTCGAATAGTGTTTTAACTAAGAAAGATACATTCTCAAAATTACAAGTTGCAATATCGGTTAATGATCGAAACCGCATCAACGTTAAGAGGGCCGTTCCGGCACACGCGAAAAGACCCGAACAACCTGCAAAGCACACCAAGAAGAAGGCTAAACCGGGGGAAAGCACTCGTCGGCCAAAAGATCGGCAGCAGATTCAAGACTGTATTAAAGAGTTGAGAGGAATCATACCTCATGGTGGAAAGTGTAGCATCGATTCGTTGTTAGACCGCACGATCCGATACATGCTTTTCTTAGGAAGTGTCATCAAATATGCAGACAAATTACAAGAGCCTAATGAGCCAAAGCTTATTGATCAAGCAACTGGAGTGATTCCAAAACACAAAAACCATGGTGCTACATGGGCATTTGAAGTATCAAACCCAACAATGTTATGTCCAATTATAGTCGAGGACATGAATCCGCCCGGCCAAATGCTTATCGAGATGCTTTGCGAGGATCAAGGCTTCTTCCTTGAGATACTCGACATAATCAGAGGTTTCGGGCTGAATATCTTGAAAGCAAAGATGGATTTACGGAAGAAGAAACTATGGGCGCGCTTTATCGTTGAGGCAAATAGACATGTGACAAGGATAGATGTGTTTTGGTCCCTTATTCGTCTTCTACAACAACCAAACTCCATCGGAATCGACTCTTCGTCGTGTAACCGTAGCGATTAA 2085 0.4077 MEMTMPVSLRNKLKTLCDYGDGWSYAILWRFHQTNPMLLNVEEAYYEEELREEIQNMVPLVHLLGEGIVGEAAFTGKYSWLHSVSCEDDSGVFQQFNSGMIKTIVAIPVKPFGVAQFGSRKKVLETMDFLDQTQSLLEEIGEVGLLNGSENAVLSMDFTSEGIDGLLASFSAENSCDWNLRSTNDENYKDPREVFSSEERVTSLEFEENSCFDSLLQQFVSETMAQEVLFRENIQSSMVNVATEADLPSSSNTLNGIISNSLEPVDMLEEFLKFGSVDDLCEWFDPSPDETTICKTMIQLENTLSEPVEFNPTRSDPGLAEKETSVVIHSSENDFLDNTEFDLGSDQGSELWGNLLTPMVNASCNDNIAFSECVSELNTGTPTDNTRKRLFAELGIEELLRGEANYNSPFSSSNFENELSSNKKQMVEFSPTKRTQVHFASLTGSNLMHPVSDLAESNSVLTKKDTFSKLQVAISVNDRNRINVKRAVPAHAKRPEQPAKHTKKKAKPGESTRRPKDRQQIQDCIKELRGIIPHGGKCSIDSLLDRTIRYMLFLGSVIKYADKLQEPNEPKLIDQATGVIPKHKNHGATWAFEVSNPTMLCPIIVEDMNPPGQMLIEMLCEDQGFFLEILDIIRGFGLNILKAKMDLRKKKLWARFIVEANRHVTRIDVFWSLIRLLQQPNSIGIDSSSCNRSD* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1246 694 MobiDBLite consensus disorder prediction 489 519 - -
Psa6g1246 694 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 136 IPR025610 -
Psa6g1246 694 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 505 554 IPR011598 GO:0046983
Psa6g1246 694 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 7 689 IPR043561 GO:0003700|GO:0006355
Psa6g1246 694 MobiDBLite consensus disorder prediction 484 519 - -
Psa6g1246 694 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 518 560 IPR036638 GO:0046983
Psa6g1246 694 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED 7 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1246 Psa-Chr6 52839606 52843007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1246 497 689 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 53.093 5.29e-59 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1246 - - cam:101509177 877.856