Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1236 ATGGGTTCGGGAAGCAGAAGCTATTCTGCGAATCCTAGCGATTACAAGCTTCTAGAGGAAGTAGGTTATGGTGCAAGCGCAACCGTTTATCACGCAGTTTACCTCCCTTACAACGAAGAAGTAGCTGTGAAATCTCTCGATCTAGATCGATGCAACTCCAATTTCGACGATATTCGAAAGGAAGCGCAGATCATGAGCTTAATTGATCACCGTAACGTTGTTAAATCGTATTGTTCGTTCGTTGTTGATCATAAGCTTTGGGTTATTATGCCTTTCATGGCGCAGGGTTCTTGTTTGCATCTAATGAAAGCTGCTTATCCTGATGGACTTGAAGAAGATGCTATTGGATCCATTCTTAAAGAAACTCTTAAGGCGTTGGATTATCTTCATCAGCACGGCCACATTCATCGTGATGTTAAGGCTGGTAATATTTTGCTTGATACTAATGGTGAAGTCAAACTTTCTGACTTCGGTGTTTCCGCTTCTATGTTTGATACCGGTGATCGTCAGCGTTCCAGAAATACTTTCGTTGGTACTCCTTGCTGGATGGCACCGGAGGTGCTGCAACCTGGTACTGGTTATAATTTCAAGGCTGATATTTGGTCTTTTGGAATTACGGCACTTGAGTTGGCTCATGGTCATGCACCTTTCTCTAAGTATCCTCCAATGAAGGTTTTACTCATGACCATACAGAATGCGCCTCCCGGTCTTGATTACGACCGTGATAAAAAGTTCTCGAAGTCTTTTAAGGAAATGGTTGCTATGTGCCTGGTAAAAGATCAAACAAAGAGGCCGTCGGTGGACAAGTTACTGAAACACTCCTTCTTCAAACAAGCCAAGCCTCCGGAGCTTTCTGTGAAGAAATTATTTGGTGATTTACCGCCTCTTTGGACTCGTGTAAAAGCCCTCCAGCTTAAAGATGCAGCTCAACTAGCACTGAAGAGAATGCCTTCTGCAGAACAAGAAGCAATATCTCAGAGTGAATATAAGCGAGGAGTTAGTGCGTGGAACTTCGATGTTGAAGATTTGAAAGCTCAAGCTTCATTGGTGCAGGATGAAGATGATATTGCAGAGATAACGGAAGAAGATGAAAACAAGTTCTTCGGCTCTAACAGGGATGCAAGTGATTCTCAATCCAGCGTGGACAAGAGACATTCAGATAACTCACAACAAGACGAGTCCACATTACAAGTGGGTGGTAATGACGTACCACAGAGTGATAAAAGAAATGGATTGATTGCTGAGGCAACAGCATCTACTTCAGAAAAGGACGTGGGAACAAGCAAAATTAAAACTCAGGCAGTGAAAGTTGGTAAAACCCAAAGTGGGCCGCTTGTGCCTGGCACAGTGCTTGGTCATTATTTACCCGAAAGAGGACGTCTATTTGAAAGGTTTGAGAATGAGAGTCAGTTATCAGGTGAGAAAAGTAACCGTGATATACGACGTGCTCCAAGCTTTAGTGGTCCATTGATGCTTCCTAATCGTGCTTCAGCAAATAGTTTATCGGCCCCAATAAAATCCTCTGGAGGATTCCGAGATTCCTCAGATGATAAATCTAAGGCTAACCTAGTGCAAATTAAAGGGCGGTTCTCAGTGACATCAGAAAACTTAGATCTCGTGAAGGATATTCCTGTAAGTTCAGTTTCACGCCGATCTTCGCAGGATTCTTCACCACTGAAGAAATCTGCCAGTGTTGGTGATTGGATGGCGGATTTCAAACAACAAATGCCAATTGGAGTTGGACAGTCTTCCAATGATTCTGCCAATGTGAATATTCCCGCATCTGTTATTGTGCCTCACCTTCACAATCTTTACCAGCAGACGTCTATTCAACAGGATCTTATAATGAGTCTGTTGAATAGCTTGCAAACTGCTGAGGCAAATGATGCTTCTCAGAATGGAAAGTTGCCACCAATACCTCGCAATTCAGAGAATAATGGCAGTGTTGAGACAGCAGCTTCAGAGAGAGAACAACTTCTGCTGGCCAAAATTTCAGAACTTCAGTCTCGTGTGAGCAGTTTGACAGATGAACTTACTTCTGAGAAGTTAAAACACATGCAGTTGCAACAACAGGTAGCTGCTGTCCATAGCCAGGAGCAAAACGGAGAAAGAGAGGAAGGTGCATGA 2127 0.4325 MGSGSRSYSANPSDYKLLEEVGYGASATVYHAVYLPYNEEVAVKSLDLDRCNSNFDDIRKEAQIMSLIDHRNVVKSYCSFVVDHKLWVIMPFMAQGSCLHLMKAAYPDGLEEDAIGSILKETLKALDYLHQHGHIHRDVKAGNILLDTNGEVKLSDFGVSASMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPSVDKLLKHSFFKQAKPPELSVKKLFGDLPPLWTRVKALQLKDAAQLALKRMPSAEQEAISQSEYKRGVSAWNFDVEDLKAQASLVQDEDDIAEITEEDENKFFGSNRDASDSQSSVDKRHSDNSQQDESTLQVGGNDVPQSDKRNGLIAEATASTSEKDVGTSKIKTQAVKVGKTQSGPLVPGTVLGHYLPERGRLFERFENESQLSGEKSNRDIRRAPSFSGPLMLPNRASANSLSAPIKSSGGFRDSSDDKSKANLVQIKGRFSVTSENLDLVKDIPVSSVSRRSSQDSSPLKKSASVGDWMADFKQQMPIGVGQSSNDSANVNIPASVIVPHLHNLYQQTSIQQDLIMSLLNSLQTAEANDASQNGKLPPIPRNSENNGSVETAASEREQLLLAKISELQSRVSSLTDELTSEKLKHMQLQQQVAAVHSQEQNGEREEGA* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1236 708 CDD STKc_OSR1_SPAK 13 276 - -
Psa6g1236 708 MobiDBLite consensus disorder prediction 689 708 - -
Psa6g1236 708 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Psa6g1236 708 SUPERFAMILY Protein kinase-like (PK-like) 13 326 IPR011009 -
Psa6g1236 708 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Psa6g1236 708 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 4 701 - -
Psa6g1236 708 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 701 - -
Psa6g1236 708 SMART serkin_6 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1236 708 MobiDBLite consensus disorder prediction 361 407 - -
Psa6g1236 708 MobiDBLite consensus disorder prediction 629 654 - -
Psa6g1236 708 ProSiteProfiles Protein kinase domain profile. 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1236 708 MobiDBLite consensus disorder prediction 499 518 - -
Psa6g1236 708 Gene3D Transferase(Phosphotransferase) domain 1 96 319 - -
Psa6g1236 708 MobiDBLite consensus disorder prediction 629 653 - -
Psa6g1236 708 Coils Coil 664 684 - -
Psa6g1236 708 Pfam Protein kinase domain 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1236 Psa-Chr6 51882140 51892614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1236 8 700 MAP Kinase Kinase Kinase Kinase AT4G10730 65.674 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Psa6g1236 Pkinase 1.7e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1236 - - gmx:100783699 1160.98