Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1224 ATGAGGTCATTAATGGGGACTGAGCTTATGCGGATATGTGTTAAAGAAGATAATGATGATTCTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCACTGAAAAGGGTGGAAGAGAATGAGAAACACAATGATAAAAATCCGACCAGTTCTTCTACAAGTGCTTCTGAATCTCAGTCAACTCAGGTTGGAAATGGTGTTCAATTTAGTGATACGGCTAAGGTTTCTAGGTCCCTTCGACGAAGACCATGGATTAACCATGGAAAGTGTGAGAACGGTTCTGATGAAGACTTTGATTCTGAGCGGCATGATCAAAATTTCTCCTCGAGACCTTGTCTTCCTAAAGGAGTCGTTAGAGGATGTCCAGATTGCCGTAATTGCCAAAAGGTCATTGCCAGATGGAAACCAGAAGATGCTCATAAGCCACATCTCGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAATTTCAAGATACTTTGAAATACATATCAAGTATTCGCTCAAGAGCTGAACCATATGGAATTTGTCGTATTGTTCCCCCGCGTTCATGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTATATGGGAGGGTTCTAAATTTGCCACCCGTGTTCAGAGAATCGACAAACTTCAGAATCGTAATTCAGGGGCAAAGAAGTCAAGGATTCAAAATAATTTGAAAAGGAAGAGGAGATGCACGAGAATGGCAGTGGATAATGGCACTGGAACAGAGCCTAATGCAGTATTTTGTGAAGCTGAAAGGTTTGGGTTTGAACCTGGCCCAGAGTTTACGTTGGAAACATTTAAGAGATATGCAGACGAGTTTAAGGTCAAATACTTCAGAAATGATAATTTATCTCATCCAAGCACTAATACAACAATTTTAAATGGTAACTCGGATCCTTCTGTGGAGAATATTGAGGGTGAATACTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTTCCCAGCAAGTCTAGTCAAGTTTCTGTTTCATATGATCAATACATAAAATCTGGCTGGAATTTAAATAACTTTGCGAGGTTACCTGGATCTCTGCTCTCTTATGAAACCAGTGATATATCTGGTGTTGTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCATTTTGTTGGCATGTGGAAGATCACCATCTATATTCATTGAACTTTATGCACTGGGGTGCTCCTAAACTGTGGTATGGTGTCCCTGCAAAAGATGCGTGCAAATTGGAAGAGGTCATGCGAAAGCATTTACCTGAACTTTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACACAACTCTCTCCTTCTATTCTTAAGTCAAAAGGTGTACCAGTTTATAGATGTGTCCAAAACCCTGGAGACTTTGTTTTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGTTGCCCCATGGACATATTGCTATAGAGCTGTATCGGGAGCAGGGGCGCAAGACTTCCATATCTCATGATAAGCTATTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCCCAGTGGGAGCTTGCTTTGCTGAAGAAAAACACTTTGGATAATCTAAAATGGCAAGATGTTTGTGGAAAGGATGGTCTTTTGGCAAAAGCATTCAAGGCACGTGTTGAGATGGAGCGAGTAAGAAGGGAATTTCTTTGCAGTTCTTCAAAAGCATTAAAAATGGAGAGTAGTTTTGATGCTGCAAGTGAAAGGGAATGCAACATCTGCTTTTTTGATTTACACCTATCTGCTGCTGCCTGTCATTGTTCCTCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCACTTGGAACTCCAAATTTTTCCTCTTTCGATATGATATTAGTGAACTAAATGTTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAAGTTACATCTTGGGCTGGCACTAACTTCGTATGTCTCAGTTGATAAAAGAACAGTTGTTCAGGAATTGAAATCGGATTCATCCAACTCGTCGCATTCTTCCAGGGTCAACATGAATAAAGAGGTGGCTTTGCATCCATCAAATAAGTTTATTGACAATTCTCAATTGACCGATGCTCCAATAGTGGATCGAGCAACTTCGGCAAATAGCAAGGATCATAGCTATCTTAAACAGAGGAAATCAGCAGAAATTGTATCTCCTTTGAGTCACACAAAGGAACTATCAATATTTAATAGCTCTAAACCTACATGTGAAATAGCTAATCGTAAAATCTGTGTTATTAAAGAAGAATCTGTTATTTGCAAATCGAAGCCGAATGCTTCTGTATGTCAATTAAATGAAGAAGATTCTTCATATGCTTTATCTCCGCCTTTAGCTCAACATGAAGATGAGAAAAGTTCACATTGCAGACCCGACAATATCATACTTCTTAGTGATGATGAAGATGAAGAAATGAAGATGCCAGATTCAAATAGAAGGAAGGAGGTTCCTCAAATGCTTGCTGGTTCTAGAAATAAAGCAATCCTGTGTAATGATATAGAATATAAAAGCTTGACCATCCCTTTGACAGGTGCTTCTGTGGTGGGTGAGAAGGAGGCTATTATGCTGCCTCGTGAAGATCCGGGTTCGTGTTCAACTCAGCTTTTGCATGTGAAACAAGAACCTCATGAACAGAGAGGACCAAACCTACCTTCTACCCCAGTAGATCTTTCTTTTCATATCGGTCTTACTGGCGCAGAATCAGTAAGGAACATTCCAGCTTCTTCAAGAGTGGAGGCTGGTGATCATAGTTTGGAAAGTTTGGAGGTTTGTCCTCTGAAACCACAACCTTCCGGCACTATTAAGGCTAAGAGTGAGGATAATCATGAGAAGTTAGGTGGTTGTTCCACTTCTAATGTAATAGATAATGCAAGAGCTATTAATGGAAACATCTCGTGTGGTCCAAACAATTACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTACGTCGTATTAACTGCAATGTTGAGCCTTTGGAATTTGGAATTGTCCTTTCTGGAAAGTCATGGTGCAGCAGTCAGGCTATTTTTCCAAAGGGATTTAGAAGCCGTGTTCGCTATATAAATATCTTAGATCCATGCAGTACCTGTTACTATCTTTCAGAAATTCTTGATGCTGGACGTGGTTCACCTCTATTTATGGTTTCCTTGGAAAATAGTCCAAATGAGGTCTTCATTCATATGTCAGCAGCAAAATGCTGGGATCTGGTTAGAGAGAGAGTGAATATAGAGATAGCAAAACAACATAAGCTGGGAAAAAAAGGTCTTCCTCCTTTACATCCTCCTGGAAGCCTTGATGGCTTTGAAATGTTTGGATATTCTTCACCAGCAATAGTGCAGGCTATTGAGGCTCTAGATCGAAGTCGAGTTTGTAAAGAATACTGGGACTCTCGGCCATTCTCTCGGCCTCAAGGGCAGCTTTCACAAGCTGGCCAGACCACTGTGAATGGTGGAGGTGGGAACGATCAAGGGGTTACCACTAATCCGAACACACCCGTTGGAACCGTTGCAGCAGTAAAGAGGCTATTTAAAAAGGCGAATGCGGAAGAATTGAACTCTCTGTACAGCATTCTTACTGACAGTAAGCCAGCAGCTGAACATATCCCAATTAGGCAAATTCTCTTCGAAGAAATTCACAAAACCCAACCACCCTAG 3789 0.4141 MRSLMGTELMRICVKEDNDDSPSVPPGFESYTSFSLKRVEENEKHNDKNPTSSSTSASESQSTQVGNGVQFSDTAKVSRSLRRRPWINHGKCENGSDEDFDSERHDQNFSSRPCLPKGVVRGCPDCRNCQKVIARWKPEDAHKPHLEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPRSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRNSGAKKSRIQNNLKRKRRCTRMAVDNGTGTEPNAVFCEAERFGFEPGPEFTLETFKRYADEFKVKYFRNDNLSHPSTNTTILNGNSDPSVENIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQVSVSYDQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYIGMCFSSFCWHVEDHHLYSLNFMHWGAPKLWYGVPAKDACKLEEVMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSISHDKLLLGAAREAVRAQWELALLKKNTLDNLKWQDVCGKDGLLAKAFKARVEMERVRREFLCSSSKALKMESSFDAASERECNICFFDLHLSAAACHCSSDRYACLDHAKQFCSCTWNSKFFLFRYDISELNVLVEALEGKLSAVYRWAKLHLGLALTSYVSVDKRTVVQELKSDSSNSSHSSRVNMNKEVALHPSNKFIDNSQLTDAPIVDRATSANSKDHSYLKQRKSAEIVSPLSHTKELSIFNSSKPTCEIANRKICVIKEESVICKSKPNASVCQLNEEDSSYALSPPLAQHEDEKSSHCRPDNIILLSDDEDEEMKMPDSNRRKEVPQMLAGSRNKAILCNDIEYKSLTIPLTGASVVGEKEAIMLPREDPGSCSTQLLHVKQEPHEQRGPNLPSTPVDLSFHIGLTGAESVRNIPASSRVEAGDHSLESLEVCPLKPQPSGTIKAKSEDNHEKLGGCSTSNVIDNARAINGNISCGPNNYRQKGPRIAKVVRRINCNVEPLEFGIVLSGKSWCSSQAIFPKGFRSRVRYINILDPCSTCYYLSEILDAGRGSPLFMVSLENSPNEVFIHMSAAKCWDLVRERVNIEIAKQHKLGKKGLPPLHPPGSLDGFEMFGYSSPAIVQAIEALDRSRVCKEYWDSRPFSRPQGQLSQAGQTTVNGGGGNDQGVTTNPNTPVGTVAAVKRLFKKANAEELNSLYSILTDSKPAAEHIPIRQILFEEIHKTQPP* 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1224 1262 MobiDBLite consensus disorder prediction 16 74 - -
Psa6g1224 1262 ProSiteProfiles FYR domain FYRC motif profile. 1086 1176 IPR003889 GO:0005634
Psa6g1224 1262 PANTHER LYSINE-SPECIFIC DEMETHYLASE 82 727 - -
Psa6g1224 1262 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1002 1259 - -
Psa6g1224 1262 ProSiteProfiles JmjN domain profile. 149 190 IPR003349 -
Psa6g1224 1262 ProSiteProfiles JmjC domain profile. 358 521 IPR003347 -
Psa6g1224 1262 Gene3D - 1033 1170 - -
Psa6g1224 1262 Pfam JmjC domain, hydroxylase 388 504 IPR003347 -
Psa6g1224 1262 Pfam F/Y-rich N-terminus 1039 1081 IPR003888 GO:0005634
Psa6g1224 1262 ProSiteProfiles FYR domain FYRN motif profile. 1026 1084 IPR003888 GO:0005634
Psa6g1224 1262 MobiDBLite consensus disorder prediction 49 74 - -
Psa6g1224 1262 SMART JmjN_1 148 189 IPR003349 -
Psa6g1224 1262 Pfam F/Y rich C-terminus 1089 1172 IPR003889 GO:0005634
Psa6g1224 1262 Gene3D Cupin 134 505 - -
Psa6g1224 1262 SMART cupin_9 358 521 IPR003347 -
Psa6g1224 1262 PANTHER JUMONJI 14-RELATED 82 727 - -
Psa6g1224 1262 PANTHER JUMONJI 14-RELATED 1002 1259 - -
Psa6g1224 1262 SMART fyrn_3 1040 1084 IPR003888 GO:0005634
Psa6g1224 1262 SUPERFAMILY Clavaminate synthase-like 356 549 - -
Psa6g1224 1262 SMART fyrc_3 1090 1184 IPR003889 GO:0005634
Psa6g1224 1262 Pfam C5HC2 zinc finger 611 661 IPR004198 -
Psa6g1224 1262 Pfam jmjN domain 150 183 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1224 Psa-Chr6 50760507 50772237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1224 5 1257 JUMONJI Transcription Factor Family AT1G08620 54.037 0.0 1239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa6g1224 JmjC 1.5e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1224 - - gmx:100800271 1987.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1224 6 50760507 50772237 Psa6g1224 6 50760507 50772237 ECH
Psa3g1332 3 120002887 120007062 Psa6g1224 6 50760507 50772237 ECH