Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1212 ATGGAACACAACAACAACAAAAGCCAAAAAATGAATTCTGAAGCTGGTCCCTCTGCCAATCACAGCACTAGGGAGAAAATGTTTCACTTCGATTTAAATGAACTTCCTGATTCTGATTATTCTGAGGATTCTCCTGATGATTGCCACGTGGCAACAAGAGAAGATGCAGAGCCCCAAGGTGATGATGAAGTTGAGAAATCAGTGTCTGATTTTTCATTTCCTATTCTCGAAGGACGTGTTGTTTCAGAAGATGAAGTGAGTGTGGAAAACTATAAGAATCCGGTGGTTAACTCTGATGAAATTCGTAGGGCTTTGAAAGGGAAAATGCCGATGAGTTATTCTGTAGGTGGTTGTTCCAGAGAAGTTAATGCTTATACAGAAGCTGCTGCTGCTGTTCTTGGTGACGACGATGACGATGAAGACGATGATGAAGAAGTAGTGAAAGATATGTCAACTGATGAAGATGATGAAGTTCCAGATGAACCTTCTAGTGACGAAGGAAGTGCCATTGAAGGAATCTTGATGCTTCACGGACAAGATCCTGATGGTGCTAGTGGATCTCGTTTTCAAAGCAAGAGAAAGAGAGATTTCTCTGAATACTACAAACCTCCTTGCACTAGGATCGGAGGAGCTGGACCGAAAACTGTGATCCAAGTGGAAAGCAACAAAGATATAGTTGATGATGGTTATCGCTGGCGCAAATATGGACGCAAAGAAATCAAAGGAAACCCTAATAACCCTAGGGGATACTATAGGTGCACATCACAAACCTGCAATGCAAGAAAACAGGTGGAGAGGGATGCCAAAAACTCAAAGTATGTCATTGTTTCATATGAAGGAATACATAACCATGGATTACCACCCACAAAACCTAAGAGTCCAACACCAACACCAACACCAACTCTGACACCAACACCAACACCGACACCGACACCGACACCGACGCAGACGCAGACACCAACACAGACACCAACACCGACACAGACACCCTCCAGCAATACCACTACACCTGCAGTCCGTGGGAATACCATCAAACCATCGCGACCGATACTTCCATTTCCACCGGCTAGCTCTCTCTCCCCTTATCCCCACTATGCAAACTTTGGACTTATTCCTGGTTATAGACCTTATGGGATGATGAACTATATGTGGCCTAATAACAGTCATTTCTACAACATGGCTCGTAAGAGTAACACGGCGGTGCCATCTTATGGCAGTGTTAGTAGTTTAAATCTTCGGAACCGTTTTGCTACTTCTTTTGCTAACCCTCAAAATGCTGTACGTGGGCCTGCAACTGGTAGAGCGGCACCGTTTTCTGGTTTTCCAATATCACCATCACTGCCACCTTTTGATACTGTGCCTTATGGTCATGATTTTCTTCATATTCGTGGGTATAGTACTTCTGCTGCGGCAGCTGCTGCAACTGCAGCTACTACTGCTCAACTCTTTCCTGTGAGAGAAACTACAACTGCTCAACTCTTTCCTTTGAGAGATACTACTACCCCAGCGGAGGAAGAAGACAAGGATGTTGTTCCTGAGAATGAATGA 1548 0.4425 MEHNNNKSQKMNSEAGPSANHSTREKMFHFDLNELPDSDYSEDSPDDCHVATREDAEPQGDDEVEKSVSDFSFPILEGRVVSEDEVSVENYKNPVVNSDEIRRALKGKMPMSYSVGGCSREVNAYTEAAAAVLGDDDDDEDDDEEVVKDMSTDEDDEVPDEPSSDEGSAIEGILMLHGQDPDGASGSRFQSKRKRDFSEYYKPPCTRIGGAGPKTVIQVESNKDIVDDGYRWRKYGRKEIKGNPNNPRGYYRCTSQTCNARKQVERDAKNSKYVIVSYEGIHNHGLPPTKPKSPTPTPTPTLTPTPTPTPTPTPTQTQTPTQTPTPTQTPSSNTTTPAVRGNTIKPSRPILPFPPASSLSPYPHYANFGLIPGYRPYGMMNYMWPNNSHFYNMARKSNTAVPSYGSVSSLNLRNRFATSFANPQNAVRGPATGRAAPFSGFPISPSLPPFDTVPYGHDFLHIRGYSTSAAAAAATAATTAQLFPVRETTTAQLFPLRDTTTPAEEEDKDVVPENE* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1212 515 MobiDBLite consensus disorder prediction 500 515 - -
Psa6g1212 515 MobiDBLite consensus disorder prediction 289 319 - -
Psa6g1212 515 MobiDBLite consensus disorder prediction 1 70 - -
Psa6g1212 515 MobiDBLite consensus disorder prediction 129 205 - -
Psa6g1212 515 ProSiteProfiles WRKY domain profile. 221 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g1212 515 MobiDBLite consensus disorder prediction 320 342 - -
Psa6g1212 515 Gene3D WRKY domain 211 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa6g1212 515 MobiDBLite consensus disorder prediction 187 201 - -
Psa6g1212 515 SMART WRKY_cls 226 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g1212 515 MobiDBLite consensus disorder prediction 132 164 - -
Psa6g1212 515 MobiDBLite consensus disorder prediction 24 68 - -
Psa6g1212 515 MobiDBLite consensus disorder prediction 493 515 - -
Psa6g1212 515 Pfam WRKY DNA -binding domain 227 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g1212 515 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 130 286 - -
Psa6g1212 515 SUPERFAMILY WRKY DNA-binding domain 220 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa6g1212 515 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 130 286 IPR044810 GO:0003700
Psa6g1212 515 MobiDBLite consensus disorder prediction 281 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1212 Psa-Chr6 48694734 48697346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1212 180 284 WRKY Transcription Factor Family AT5G41570 42.857 1.02e-23 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa6g1212 WRKY 8.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1212 K18835 - mtr:MTR_1g078260 276.559