Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1173 ATGTCTTTTCATTGGTTTTATTTCACATGGCTATTTCTCATGATTGGTTTGAGAATAGAGCTATCAAATGCTCAAATTCATAAAAGATATGGCAATAGGTTATATCCTTACAAGACAATAGTTGTTGATCCAAAGAGAAGAGGATGTTTTTCCACTATACAATCTGCCATTGATTCTATACCTTCAAACAATAGGTATTGGACTTCCATTAATATCAAAGCAGGTTACTACAGGGAGAAATTGACGATTCCATATGATAAGCCTTATATCATTATTCAAGGAGATGGAATGAGCAAAACTTTGGTTGAATGGGATGACCATGCAAACACTATGCAGAGTGCTACGTTTTTTACTATGGCTGACAATATTGTAGTCAAGTATATCACTTTTAAGAACTCATACAATGATCCAGAAAAACGTAACCCATGGTTACCTGCCGTAGCCGCAATGGTAAGTGGTGACATGTCATACTTCTATGGCGTTGGCTTCTTAGGTTTTCAAGACACTTTGTGGGATGATAATGGACGACATTACTTCCATAATTGTTTCATCCAAGGTGCCGTCGATTTCATATTTGGTGCCGGCCAGTCTTTATACGAGGGTTGTACGATATCAGTTATTGCTCAAGCATTAGGTCCAGGAGTACCTGGAATTATAACAGCGCAAGGGAGAACAAATCCAAATGATGCAAATGGGTTTGTTTTTAAGCATTGTAAGATATATGGAGATGGAACAACATATTTGGGAAGACCATGGAGAGCTTATGCTAGGGTTTTTTTCTACAATAACAATATGTCCAATATTGTTAACCCTCTTGGTTGGGATCCATGGAATTTTGTTGGACACGAGGATCGTATACAATTCTCGGAGTATTTAAATTATGGATATGGTGCTACCACAAACTATAGAGTGAAATGGACTAAGAATTTGGATATGAATACTATTAATACAATGGCAAGTCTTAGTTTTATTGATAATGATGGATGGCTTCAAAATCAACAATTCTAA 1008 0.3641 MSFHWFYFTWLFLMIGLRIELSNAQIHKRYGNRLYPYKTIVVDPKRRGCFSTIQSAIDSIPSNNRYWTSINIKAGYYREKLTIPYDKPYIIIQGDGMSKTLVEWDDHANTMQSATFFTMADNIVVKYITFKNSYNDPEKRNPWLPAVAAMVSGDMSYFYGVGFLGFQDTLWDDNGRHYFHNCFIQGAVDFIFGAGQSLYEGCTISVIAQALGPGVPGIITAQGRTNPNDANGFVFKHCKIYGDGTTYLGRPWRAYARVFFYNNNMSNIVNPLGWDPWNFVGHEDRIQFSEYLNYGYGATTNYRVKWTKNLDMNTINTMASLSFIDNDGWLQNQQF* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1173 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 17 334 - -
Psa6g1173 335 Pfam Pectinesterase 40 325 IPR000070 GO:0030599|GO:0042545
Psa6g1173 335 PANTHER PECTINESTERASE 10-RELATED 17 334 - -
Psa6g1173 335 SUPERFAMILY Pectin lyase-like 36 331 IPR011050 -
Psa6g1173 335 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Psa6g1173 335 Gene3D - 36 335 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1173 Psa-Chr6 46309063 46311306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1173 38 283 Carbohydrate Esterase AT2G19150 49.393 9.68e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1173 - - gmx:100819252 443.736