Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1169 ATGATTCCGAATTTGAACTTGGAAGCTGAAAATAGTTTAGAAGTAAGCAGCCAAGTAGGTTCCAACTTTTACTTTCAAGAAACAACATCTTATAAAGATGATGTTACCAAAGACAGTGCAACAACTTCATGTCTTACAAATCTTCCAGATTCCGAATCCCTTGACCCGACTCTCACCTTCGATCCGATCGACGAAGATTTCAAGGAAACAAGCGACACGAACAGCGAAATAGTAGGAGCTGATCAGGCTAATAACACCACCGCGTCAGCGCCACCGGTTCACAGAGTTTTCTCTTGTAACTATTGTAAGAGGAAGTTCTTTAGCTCACAAGCGTTAGGCGGACATCAGAACGCTCACAAAAGGGAGAGATCGATGGCGAAGCGCGCAATGCGAATGGGAATGTTCACTCAAAGGTATACAAGCTTAGCTTCTTTACCTCTGCATGGTTCTTCTTCTTTGCATTCTCTTGGTATTCAAGCTCATGCTGCAATGCATAACAATCATGTGCCATCGTCGTTGTCAATGAGGGCTAATGATATAAGAGCTACAGAAAAACTCGAGAATGAGTATTTCAGAGCAGCGCCGATGTTTATGCATAACTACGACGCGGGTGTGTTTTGGCCTGGAAGTTTCAGACAGATAGATCAAAGTGTTCATGCTCATAATTCAAATTTGAATACTGGTTTTGTTGTAGCAACAGAACCTCCTCAACAAATATCTAATGTATCTCCTGATCTCACTCTCAGGCTTTAA 753 0.421 MIPNLNLEAENSLEVSSQVGSNFYFQETTSYKDDVTKDSATTSCLTNLPDSESLDPTLTFDPIDEDFKETSDTNSEIVGADQANNTTASAPPVHRVFSCNYCKRKFFSSQALGGHQNAHKRERSMAKRAMRMGMFTQRYTSLASLPLHGSSSLHSLGIQAHAAMHNNHVPSSLSMRANDIRATEKLENEYFRAAPMFMHNYDAGVFWPGSFRQIDQSVHAHNSNLNTGFVVATEPPQQISNVSPDLTLRL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1169 250 PANTHER ZINC FINGER PROTEIN JAGGED 8 250 IPR045320 GO:0003700
Psa6g1169 250 Gene3D Classic Zinc Finger 79 144 - -
Psa6g1169 250 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
Psa6g1169 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Psa6g1169 250 PANTHER ZINC FINGER PROTEIN 3-RELATED 8 250 - -
Psa6g1169 250 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1169 Psa-Chr6 46006159 46008519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1169 95 250 C2H2 Transcription Factor Family AT1G66140 42.703 1.47e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g1169 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1169 - - cam:101511411 277.33