Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1156 ATGGAACAAACCTTTGAGTCCACCTTCAGTTTTTGGTCCTCAAACATCCTAGAAACTCAAAATTGCAATAACATGACACAAACATCTTTCTCTAAGCCTCCAAGATCATCCTCCAATCTAAGCAACCGTAAACCCTCTTTGATGAACATCAAAATTCCTTCTATAACCAAACCTCTCCCACAACAAAACACTGAAGAGGATAATAAGCACTATAGAGGTGTTAGAAGAAGACCATGGGGGAAATTTGCTGCAGAAATCCGTGACCCTAACAGAAAAGGGTCAAGGGTGTGGCTTGGAACCTTTGACACCGCCATAGAAGCTGCAAAAGCTTATGATAAAGCTGCTTTTCAGATGAGAGGAAGTAAGGCCATATTGAACTTTCCTCTAGATGTTGCAACCGATGAATCTACAGATTCATCGGTTTCACTTTCTAGCTCAAAATACATCAAAGTTGGCGAGAAAAGACAAAGAGAAGAAGGTAATTACGTTGAAATTGAGATAAAAAGCAGTAGTAGTAATAATAATAAACAAGTGAAGAAAGAAGAAGGAGTTTCAGTTTGTCCTCTAACTCCTTCATGTTGGAAAGGGTTTTGGGATACTGATGTTATGGGAACTATCTTCAGTGTACCTCCTTTGTCACCCTTATCTCCACTTATGGGATGTTGA 666 0.3934 MEQTFESTFSFWSSNILETQNCNNMTQTSFSKPPRSSSNLSNRKPSLMNIKIPSITKPLPQQNTEEDNKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFQMRGSKAILNFPLDVATDESTDSSVSLSSSKYIKVGEKRQREEGNYVEIEIKSSSSNNNKQVKKEEGVSVCPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMGC* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1156 221 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Psa6g1156 221 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Psa6g1156 221 MobiDBLite consensus disorder prediction 27 46 - -
Psa6g1156 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 23 205 - -
Psa6g1156 221 SUPERFAMILY DNA-binding domain 70 130 IPR016177 GO:0003677
Psa6g1156 221 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 205 - -
Psa6g1156 221 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Psa6g1156 221 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Psa6g1156 221 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Psa6g1156 221 CDD AP2 69 128 IPR001471 GO:0003700|GO:0006355
Psa6g1156 221 Gene3D AP2/ERF domain 69 130 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1156 Psa-Chr6 45311419 45313415 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1156 36 220 AP2-EREBP Transcription Factor Family AT5G51190 53.403 1.19e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g1156 AP2 5.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1156 K09286 - gmx:100816416 232.261