Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1155 ATGACAACAGCAAAAGAAACTTCAAACATAGATCTCATACGCCATCATCTCTTAGGTGACACCATCTCTGACCCTTTTCTCCATCCTGTTAAACTTGAAAGCCCTTCATCAGATTTCGACTTCTCTTCATATATCTCAGACGACAACGACGACAACAACAAAAACAACACCTTCTTCACTTTCCTTGAAGGCTATGATTTGATATCAGACATGGAGTTCTTCACTCACACTTCATCTCCAAATGATGAAACAAGCCATTCAAAGGAAACCGAGAAATCAAATTCATCACCTGAAGAGGCTGAAGTAGAACTACCAATACCAAGTACTATTGTGTCATCAAAGAAGATGAAGGAAGAAGAAGAGTGTGTTGATGAGACAAGGAGGTATAGAGGAGTAAGGAGAAGGCCATGGGGGAAATTTGCTGCTGAGATACGTGATCCGTCAAGGAAAGGAAGTAGGGTTTGGTTAGGTACATTTGATAGTGAAGTTGATGCTGCAAAAGCTTATGATTCTGCTGCTTTTAGAATGAGGGGTAGGAAAGCTATATTGAATTTTCCTTTGGAGGCTGGACTGTGTGATCCTAAGCCAAATAGTTGTGGCAGGAAAAGGAGAAGAGAAAGTGAAAGTGAAGGTACAACAAGTCCTAGTTCAAGTTCATGA 660 0.4061 MTTAKETSNIDLIRHHLLGDTISDPFLHPVKLESPSSDFDFSSYISDDNDDNNKNNTFFTFLEGYDLISDMEFFTHTSSPNDETSHSKETEKSNSSPEEAEVELPIPSTIVSSKKMKEEEECVDETRRYRGVRRRPWGKFAAEIRDPSRKGSRVWLGTFDSEVDAAKAYDSAAFRMRGRKAILNFPLEAGLCDPKPNSCGRKRRRESESEGTTSPSSSS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1155 219 MobiDBLite consensus disorder prediction 82 98 - -
Psa6g1155 219 MobiDBLite consensus disorder prediction 194 219 - -
Psa6g1155 219 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Psa6g1155 219 PRINTS Ethylene responsive element binding protein signature 168 188 IPR001471 GO:0003700|GO:0006355
Psa6g1155 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 209 - -
Psa6g1155 219 SUPERFAMILY DNA-binding domain 128 187 IPR016177 GO:0003677
Psa6g1155 219 CDD AP2 136 186 IPR001471 GO:0003700|GO:0006355
Psa6g1155 219 ProSiteProfiles AP2/ERF domain profile. 128 186 IPR001471 GO:0003700|GO:0006355
Psa6g1155 219 SMART rav1_2 128 192 IPR001471 GO:0003700|GO:0006355
Psa6g1155 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 209 - -
Psa6g1155 219 MobiDBLite consensus disorder prediction 77 105 - -
Psa6g1155 219 Pfam AP2 domain 128 178 IPR001471 GO:0003700|GO:0006355
Psa6g1155 219 Gene3D AP2/ERF domain 127 188 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1155 Psa-Chr6 45107283 45109502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1155 112 205 AP2-EREBP Transcription Factor Family AT5G07580 70.213 1.03e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g1155 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1155 - - ccaj:109813158 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1369 3 122867176 122867696 Psa6g1155 6 45107283 45109502 PCT