Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1144 ATGGTTATATATATAATTATTGGTTTTATAGGAAACTTCATAATCAAGTGTTTCAATTTCAACTACTCCCTCAACAATATGTTAGCAATATCACCTCCTCCTTTGTTCTCATCAATTGGATGGCCCTTGGAAGAGTCCATAAGCCATAACCAGAATCAAACTCACTTCTTCAAAGACACTTCTGATCAATTATTTCACTTTCACCATCAACTTGACCCCGAAAATACTTCAACTGATCCATCACAGGCTACAAGTAACGACCTTAGCATGGTGAAGAAGCTTGTTCATAACGCTAGCGAACGCGATCGCCGCAAGAAGATCAATAATTTGTATTCTTCACTTCGTTCACTTCTTCCTTTGTCAGACCAAATGAAGAAGTTGAGCATTCCATTAACAATTTCAAGAGTATTGAAATACATACCGGAGTTACAGAAACATGTGGAAGGACTGATTAAGAGAAAGGAAGAGATCTTATTCAAACTTTCGCCGAAAGTTGATCATGATGTGAAGAATCATGGTTACAACTCAGGTTTTGTGGTTTCAAGTTGTAGACTCAATGATAGTGAAGTTAGTATTCAGATTTCATGTTACAGTACTGTCCACAATGTTCCACTATCTGAGATCTTGCTCTATTTAGAAAATGATGGGTTTCTGCTTCTAAATGTTTCTTCCTCTGAAACATTTGGAGGGAGAGTCTTCTATAATTTGCACTATCAGGTTGATAAAACAAAGAGATTAGAATCAGATATTCTAAACGAGAAGCTGTTATCTATAATGGAGAAGTAG 786 0.3626 MVIYIIIGFIGNFIIKCFNFNYSLNNMLAISPPPLFSSIGWPLEESISHNQNQTHFFKDTSDQLFHFHHQLDPENTSTDPSQATSNDLSMVKKLVHNASERDRRKKINNLYSSLRSLLPLSDQMKKLSIPLTISRVLKYIPELQKHVEGLIKRKEEILFKLSPKVDHDVKNHGYNSGFVVSSCRLNDSEVSIQISCYSTVHNVPLSEILLYLENDGFLLLNVSSSETFGGRVFYNLHYQVDKTKRLESDILNEKLLSIMEK* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1144 261 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 27 260 IPR015660 GO:0003700|GO:0006357
Psa6g1144 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 159 IPR036638 GO:0046983
Psa6g1144 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 143 IPR011598 GO:0046983
Psa6g1144 261 Gene3D - 83 167 IPR036638 GO:0046983
Psa6g1144 261 SMART finulus 97 149 IPR011598 GO:0046983
Psa6g1144 261 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 27 260 - -
Psa6g1144 261 Pfam Helix-loop-helix DNA-binding domain 92 144 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1144 Psa-Chr6 44764386 44765853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1144 33 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.798 1.67e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g1144 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1144 - - mtr:MTR_1g048750 297.745