Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1126 ATGGTGAAGTTCACAGCTGATGAGTTACGTCGCATTATGGACTACAAGCACAACATTCGTAATATGAGTGTCATCGCTCATGTTGACCACGGAAAATCCACTCTAACCGACTCTCTAGTTGCTGCTGCGGGGATTATTGCCCAGGAAGTAGCAGGTGATGTCCGTATGACGGACACCCGTGCTGATGAAGCTGAGCGTGGTATAACAATCAAGTCTACCGGTATCTCACTATACTATGAAATGACTCCTGAGTCTCTCAAGAGTTATAAGGGGGAGCGTAATGGAAATGAGTATCTCATAAATCTCATTGATTCCCCTGGGCACGTTGACTTTTCATCGGAGGTTACTGCTGCACTCCGTATTACTGATGGAGCACTTGTGGTTGTAGACTGTGTGGAAGGTGTATGTGTCCAAACTGAAACCGTGCTTCGACAAGCCCTTGGAGAAAGGATCAGGCCTGTTCTTACAGTTAATAAGATGGACAGATGCTTCCTTGAGCTTCAGGTTGATGGAGAGGAGGCGTACCAGACCTTTCAAAGAGTTATTGAAAATGCTAATGTGATTATGGCTACATATGAAGATCCACTTCTCGGTGATGTTCAGGTGTATCCAGAGAAAGGAACAGTTGCTTTTTCTGCTGGTCTGCATGGTTGGGCTTTTACTCTGACAAACTTTGCAAAAATGTATGCCTCAAAATTTGGTGTTGATGAGTCCAAGATGATGGAGAGGCTCTGGGGAGAAAATTTCTTTGACCCAGCCACAAAAAAATGGACCACCAAGAATACTGGTTCAGCTTCTTGCAAACGTGGGTTTGTTCAGTTCTGTTATGAGCCTATTAAGCAGATCATTAACACTTGTATGAATGATCAGAAGGATAAGTTGTGGCCTATGCTTACAAAGCTAGGGGTCACCATGAAGTCTGATGAGAAGGACCTGATGGGTAAGCCATTGATGAAACGTGTCATGCAGACCTGGCTGCCAGCAAGTACTGCACTTCTAGAAATGATGATCTTCCATCTTCCATCACCATCCACGGCCCAGAGGTACCGTGTTGAGAATTTGTACGAGGGTCCCCTTGATGATAAATATGCAAATGCTATCCGAAACTGTGATCCGATGGTGTCAACAGGTTTGAAGGTCAGAATTATGGGACCAAATTATGTCCCTGGGGAGAAGAAAGATCTATATGTGAAAAGTGTTCAAAGAACTGTCATTTGGATGGGAAAGAGACAGGAGACTGTTGAGGATGTGCCCTGTGGTAACACTGTTGCTTTGGTTGGTTTGGATCAATTTATCACGAAGAATGCTACATTGACAAATGAGAAGGAAGTTGATGCCCACCCTAATCCGAGCTATGAATGCAAGGTTGCTTCAGATCTTCCTAAGCTAGTTGAGGGTCTCAAACGTTTGGCTAAGTCAGATCCTATGGTTGTCTGTACTATTGAAGAGTCTGGAGAACACATTATTGCTGGTGCAGGAGAGCTTCATCTAGAGATCTGTTTGAAGGACTTGCAGGATGATTTCATGGGTGGAGCTGAGATTGTTAAATCCGACCCTGTTGTGTCCTTCAGGGAGACTGTTCTAGATAGATCAGTCCGCACAGTGATGAGTAAATCACCCAACAAGCACAACCGGTTGTACATGGAAGCAAGACCTTTGGAGGATGGACTCGCAGAAGCCATTGATGAAGGCACAATTGGACCAAGGGATGACCCCAAGGTTCGCTCTAAAATCTTGTCTGAAGAGTATGGTTGGGACAAGGACCTTGCCAAGAAAATCTGGTGTTTTGGACCTGAGACCACTGGACCCAACATGGTGGTTGATATGTGTAAGGGAGTTCAGTATCTTAATGAAATCAAGGATTCTGTGGTTGCTGGATTCCAGTGGGCATCAAAAGAAGGTGCTTTGGCCGAAGAAAACATGAGAGCAATCTGCTTTGAAGTATGTGATGTTGTCCTGCACACTGATGCTATCCACAGAGGAGGTGGTCAGATCATTCCTACCGCTAGGAGAGTCTTCTATGCCTCACAGCTGACAGCCAAACCCAGGCTTCTGGAGCCTGTTTACATGGTGGAAATCCAAGCTCCCGAACAAGCTCTTGGTGGTATCTATAGTGTTCTTAATCAGAAACGTGGACATGTTTTTGAAGAAATGCAGAGGCCCGGTACCCCACTTTACAACATCAAAGCATACCTCCCTGTTGTCGAGTCCTTTGGATTTTCCAGCACACTGAGGGCTGCGACATCTGGGCAGGCTTTCCCCCAGTGTGTCTTTGATCATTGGGATACATTGTCCTCAGATCCCTTGGAGGCTGGTTCACAAGCTGCACAGCTTGTTACCGACATTCGCAAGAGGAAGGGCCTCAAGGAGCAGATGACCCCACTCTCTGACTTTGAAGACAAGCTTTAA 2409 0.4566 MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTPESLKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSASCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLTKLGVTMKSDEKDLMGKPLMKRVMQTWLPASTALLEMMIFHLPSPSTAQRYRVENLYEGPLDDKYANAIRNCDPMVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVALVGLDQFITKNATLTNEKEVDAHPNPSYECKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLDRSVRTVMSKSPNKHNRLYMEARPLEDGLAEAIDEGTIGPRDDPKVRSKILSEEYGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRAICFEVCDVVLHTDAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDTLSSDPLEAGSQAAQLVTDIRKRKGLKEQMTPLSDFEDKL* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1126 802 Gene3D Elongation Factor G (Translational Gtpase), domain 3 451 522 - -
Psa6g1126 802 Pfam Elongation factor G, domain IV 570 681 IPR005517 GO:0005525
Psa6g1126 802 CDD aeEF2_snRNP_like_IV 518 689 - -
Psa6g1126 802 Gene3D Translation factors 373 448 - -
Psa6g1126 802 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Psa6g1126 802 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Psa6g1126 802 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Psa6g1126 802 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
Psa6g1126 802 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924|GO:0005525
Psa6g1126 802 SUPERFAMILY EF-G C-terminal domain-like 455 519 IPR035647 -
Psa6g1126 802 Gene3D - 3 237 IPR027417 -
Psa6g1126 802 TIGRFAM small_GTP: small GTP-binding protein domain 20 176 IPR005225 GO:0005525
Psa6g1126 802 SUPERFAMILY Translation proteins 342 447 IPR009000 -
Psa6g1126 802 CDD EF2_snRNP_III 453 518 - -
Psa6g1126 802 Pfam Elongation Factor G, domain III 454 508 IPR041095 -
Psa6g1126 802 SUPERFAMILY Ribosomal protein S5 domain 2-like 521 685 IPR020568 -
Psa6g1126 802 CDD EF2 20 230 - -
Psa6g1126 802 CDD eEF2_snRNP_like_C 686 764 - -
Psa6g1126 802 Pfam Elongation factor Tu GTP binding domain 17 342 IPR000795 GO:0003924|GO:0005525
Psa6g1126 802 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 372 - -
Psa6g1126 802 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 374 801 - -
Psa6g1126 802 Gene3D - 529 681 IPR014721 -
Psa6g1126 802 PANTHER - 374 801 - -
Psa6g1126 802 PANTHER - 1 372 - -
Psa6g1126 802 CDD EF2_II 374 441 - -
Psa6g1126 802 Pfam Elongation factor G C-terminus 683 770 IPR000640 -
Psa6g1126 802 SMART EFG_IV_2 564 681 IPR005517 GO:0005525
Psa6g1126 802 SMART EFG_C_a 683 772 IPR000640 -
Psa6g1126 802 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 344 IPR000795 GO:0003924|GO:0005525
Psa6g1126 802 Gene3D - 682 802 - -
Psa6g1126 802 SUPERFAMILY EF-G C-terminal domain-like 686 796 IPR035647 -
Psa6g1126 802 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
Psa6g1126 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 341 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1126 Psa-Chr6 43813906 43816870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1126 1 802 Eukaryotic Initiation Factors Gene Family AT1G56070 88.019 0.0 1543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1126 K03234 - gmx:100804251 1526.15