Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1123 ATGGACGACATGGACATGATGGACATGGAAGAACTCGAATTGCTCGAATCAAGCTATCGTATCTACGAACAAGAAGACGATAACCACTACCTCTACAACCCTCCCGAAGATGAACCCGAACTCCAACCCGAACAATCACCACCAGACCTCGTTTCTCCTTCCGAACCCCAATCCAACAGCCACAAGCGTTCTCGCTCGGATCCGAATTCCGATTTGGATTTGGATTCTGCCGATATTGAAAAGAGAGAGAAAGTTAGGGTTAGAGCTGAAGATCCTCCCGCGGACGAGGATTGGCTTCGGTACTCTCCTCCTCCTTCTCCAGTTAGAGCTGAAGAAGTGATATTCTCCAAGGAAAAGACGTTGTCGCGATTTGCATCGGAGATTGATGGTGAAGTTATGCCGGTGACTGCACCTAATGGAGACAGGGTTTATACTAAGCTAGATAGGTACTATGGTGAAGATCGAGCTACGAAGCTGAATAGCGGAGAGTTTTCTTCTGATCTTGCTTTAGAACCGATCAGTGTTCTGTTTGAAAGGTTGGAGGAAGAGACTTTTGCTAAGACCTTGGAAGCTAGTTCTGAAAGCCAAAGTGTTGTAGATGTTCCTGAAACGCTAACGCTCCATGAAAAACTTTGGGTAGATAAATATGCTCCAAAATCGTTCACTGATCTTCTTAGTGACGAACAGACAAATCGCGAGGTACTATTATGGTTAAAACAATGGGATTCTACTGTCTTTGGATCTGAAATTCGAAGTACATCAGAGGATGTTTTGTCTGCTTTGAAACGGCATTCTTCTATTTCCCATAGTCAGAAACCTCTGGGTTCAGGTTTTCCAAGGACAAAGGGAGGACACGTATGGAGTAATAATAGGTATACAAATTCTAGAAGTATGGAAGGGAGTAATAATAGGTATACAAATTCTAGAAGTATGGAAGGGAGTGATAATTCAATGAGTAGTCAGGATACACACAATACTATGACACGGCATATCGGCGCACCAGAGCAGAAGATTCTTCTGCTATGTGGACCACCAGGTCTTGGAAAAACAACGCTTGCACATGTAGCTGCTAGGCATTGTGGATATCACGTGGTGGAGGTTAATGCTAGTGATGATCGTTCTTCATCAACAATTGAAGCAAAAATCCTTGACGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAAGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGTGACGGAAAGGGTGCTGTGGAGGCTCTTTTAAAGATGATTTCTGCTGAAAGGAAGCCCGGTGCAGGGAAGCAGAGTTTGGATAAGGAACAAACAGAAAAGAAATCATCAAAGAAGGGGCGGAAAATTGCATCCCTGTCAAGACCTGTGATTTGCATATGTAATGACTTGTACGCACCTGCCTTAAGATCATTACGTCAAGTGGCCAAGGTTCATGTATTTGTTCAACCAACAGTTAGTCGGGTGGTAAACAGACTAAAATATATATGTAACAAGGAGGGGGTGAAAGCCAATGCCATTGCACTCACCGCTTTAGCGGAATATACAGCATGTGATATACGCTCATGCTTGAACACACTCCAGTTTGTCTCCAAGAAGAAAGAAACCCTCAATGCGTTTGATATTGGATCGCAAGTTGTTGGTCAAAAGGACATGTCAAAAAATGTTCTAGACATTTGGAAGGAGTTGTTCCAAAGAAAAAGAACAAAAAAGATGGAAAGAAAATCCCATGATAGAAAGGTCTCTGAATTTGACACCTTGTACTCCCTTGTATCATTCCGTGGCGATAGTGACCTGATTCTGGATGGAATTCATGAAAATATTCTGCAGCTCAATTATCATGATCCAGTTATGCAGAAAACTGTCAAGTGCCTCAACAGTCTTGAAGTTTATGATCTGTTGCATCAATATATAATGCGCACACAACAAATGCCTCTCCTTGTTCATTTGCCTCCCATAGCAATTATTGTACATCGCACAGTAGCTCAAGTCCAGAAGCCAATCATTGAGTGGCCAAAGTCATATCACAGGTATCGAACAACAATGATGGAAAAGATGGACATTTTGAATAACTGGCACAACAAAATCTCGCCACTTATTGCAAGGCACTTATCAGCTACTTCTTTTGTCGAGGACTTAATTTCTCCATTGTTACATATTCTGTCTCCACCAAGTATAAGACCGGTGGCACTGCAACTACTATCAGATAAGGAGAAGAATGATCTTGCTCAATTAGTTAGCACAATGGTGTCATATGCTATCACTTATAAGAAAGTGAAGTCAGATATGCTGCCTAATACCCTGAAGTATGGAGTGAAAGATGAATTGACTTTGTCTCTTGTTCCTTCTATCAGTAACTTTTTGAACTTTAAGGATTATACTTCAAACCATTACGTACTTTCTTTAGCTATGAAGCAGGTTCTGGTGCATGAAGTTGAAAAGCATAAGATTTTACAAGCTAATGTCAAAACAGTGAGTTTAGAAAATGGAGGGCATGGAGCTATCCAAGCTGGAAATAACTGTATCCCATTTGCCAATACCAACAATAACACAGCTATAGTTGATAAGAAAACCATTGAAAGTCAAGCTAATGTTTTTGCAAGGAAATCAAATGAAGCCAAGATAGTTTCACCAAACTTGAACCTCACTAACATAGTAAATGCAACAGACAAAGTTAAACTGCTAGACATGGGAAATAGGAAAAAACCATCTAGGACTTCCTCAAGTTTCTTCGACAGGTTTATAAAGTCAAATGTTAAGGGTCTCCAAAATGATGACGGATCTCTTCAGAAAGAAACTACATCAGAGAAAGACCGAAGCCCTTTACTTTTTAAGTTTAACGAGGAGTTTTGTTACCCTACCTCTATAACAAGAACATCCTGA 2889 0.4102 MDDMDMMDMEELELLESSYRIYEQEDDNHYLYNPPEDEPELQPEQSPPDLVSPSEPQSNSHKRSRSDPNSDLDLDSADIEKREKVRVRAEDPPADEDWLRYSPPPSPVRAEEVIFSKEKTLSRFASEIDGEVMPVTAPNGDRVYTKLDRYYGEDRATKLNSGEFSSDLALEPISVLFERLEEETFAKTLEASSESQSVVDVPETLTLHEKLWVDKYAPKSFTDLLSDEQTNREVLLWLKQWDSTVFGSEIRSTSEDVLSALKRHSSISHSQKPLGSGFPRTKGGHVWSNNRYTNSRSMEGSNNRYTNSRSMEGSDNSMSSQDTHNTMTRHIGAPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSSSTIEAKILDVVQMNSVLSDSKPKCLVVDEIDGALGDGKGAVEALLKMISAERKPGAGKQSLDKEQTEKKSSKKGRKIASLSRPVICICNDLYAPALRSLRQVAKVHVFVQPTVSRVVNRLKYICNKEGVKANAIALTALAEYTACDIRSCLNTLQFVSKKKETLNAFDIGSQVVGQKDMSKNVLDIWKELFQRKRTKKMERKSHDRKVSEFDTLYSLVSFRGDSDLILDGIHENILQLNYHDPVMQKTVKCLNSLEVYDLLHQYIMRTQQMPLLVHLPPIAIIVHRTVAQVQKPIIEWPKSYHRYRTTMMEKMDILNNWHNKISPLIARHLSATSFVEDLISPLLHILSPPSIRPVALQLLSDKEKNDLAQLVSTMVSYAITYKKVKSDMLPNTLKYGVKDELTLSLVPSISNFLNFKDYTSNHYVLSLAMKQVLVHEVEKHKILQANVKTVSLENGGHGAIQAGNNCIPFANTNNNTAIVDKKTIESQANVFARKSNEAKIVSPNLNLTNIVNATDKVKLLDMGNRKKPSRTSSSFFDRFIKSNVKGLQNDDGSLQKETTSEKDRSPLLFKFNEEFCYPTSITRTS* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1123 962 Gene3D - 486 556 - -
Psa6g1123 962 CDD AAA 334 423 - -
Psa6g1123 962 CDD HLD_clamp_RFC 486 544 - -
Psa6g1123 962 MobiDBLite consensus disorder prediction 60 94 - -
Psa6g1123 962 MobiDBLite consensus disorder prediction 20 34 - -
Psa6g1123 962 MobiDBLite consensus disorder prediction 20 94 - -
Psa6g1123 962 MobiDBLite consensus disorder prediction 290 325 - -
Psa6g1123 962 Gene3D - 209 485 IPR027417 -
Psa6g1123 962 MobiDBLite consensus disorder prediction 431 449 - -
Psa6g1123 962 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 3 953 - -
Psa6g1123 962 Pfam ATPase family associated with various cellular activities (AAA) 339 464 IPR003959 GO:0005524|GO:0016887
Psa6g1123 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 540 IPR027417 -
Psa6g1123 962 MobiDBLite consensus disorder prediction 430 450 - -
Psa6g1123 962 SMART AAA_5 335 489 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1123 Psa-Chr6 43634915 43660743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1123 333 533 Core DNA Replication Machinery Family AT5G22010 32.870 5.47e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1123 K11269 - gmx:100785041 1274.23