Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1122 ATGGCAAACCCTAAGGTTTCCTTCGACATGACCGTCGACGGCCAACCCGCTGGACGCATCGTCTTCGAGCTTTATGCCGATGTCACCCCCAGAACCGCTGAGAATTTTCGTGCTCTCTGCACTGGCGAGAAAGGAGTCGGTCGTAGTGGCAAGCCTCTCCACTTCAAGGGATCCTCCTTTCATCGTGACTTCACCGTCGGGAACGGCACCGGAGGAGAATCGATCTACGGTTCCAAGTTCGCTGACGAGAACTTCATCAAGAAGCACACTAGACCAGGAATCTTGTCCATGGCGAACGCCGGTCCCGGAACCAACGGATCTCAGTTCTTCATCTGCACTGCCAAGACTGAGTGGCTCGACGGGAAGCACGTTGTGTTCGGTCAAGTTATTGAGGGATTGAACGTTGTGAAGGACATAGAGAAGGTGTTAAAGCTGAAGAGCTTTTTGAGAAAACCGGAGAGACTTGTTAGTGTTTCGGAAGAGACTACAACTGGTGTTAAGAGGCTTTATCAGATGCAAGCCAGTGGAACTCTTTTGTTCCCTGCTATTAATGTCAATGACTCTGTCATCAAGAGCAAGTTTGACAACTTGTATGGATGCCGTCACTCTCTTCCAGATGGTTTGATGAGGGCTACTGATGTTATGATTGCTGGGAAAATGGGTGTTGTCTGTGGACACAAAGATGTTTTTTGTTTTATTTTTTATTATCTTCTATGTACTTTTCTTTTCCTAAAGGGTATGGTGGACCCGATAAGTGTTTTGATTCTGGTCAAAATTTATGGTTGA 786 0.4695 MANPKVSFDMTVDGQPAGRIVFELYADVTPRTAENFRALCTGEKGVGRSGKPLHFKGSSFHRDFTVGNGTGGESIYGSKFADENFIKKHTRPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGQVIEGLNVVKDIEKVLKLKSFLRKPERLVSVSEETTTGVKRLYQMQASGTLLFPAINVNDSVIKSKFDNLYGCRHSLPDGLMRATDVMIAGKMGVVCGHKDVFCFIFYYLLCTFLFLKGMVDPISVLILVKIYG* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1122 261 SUPERFAMILY Cyclophilin-like 2 145 IPR029000 -
Psa6g1122 261 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 152 IPR002130 GO:0000413|GO:0003755
Psa6g1122 261 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 147 - -
Psa6g1122 261 Gene3D - 1 164 IPR029000 -
Psa6g1122 261 Gene3D - 198 230 - -
Psa6g1122 261 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 1 147 - -
Psa6g1122 261 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 196 229 IPR015878 -
Psa6g1122 261 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 163 IPR002130 GO:0000413|GO:0003755
Psa6g1122 261 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 150 195 - -
Psa6g1122 261 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 196 229 IPR036291 -
Psa6g1122 261 Pfam S-adenosyl-L-homocysteine hydrolase 145 195 IPR000043 -
Psa6g1122 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Psa6g1122 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 93 108 IPR002130 GO:0000413|GO:0003755
Psa6g1122 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 108 120 IPR002130 GO:0000413|GO:0003755
Psa6g1122 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1122 Psa-Chr6 43627491 43628576 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1122 18 142 U-box Gene Family AT5G67530 40.741 3.69e-21 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1122 K01802 - gmx:100787030 267.7