Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1120 ATGGCAAACCCTAAGGTTTTCTTCGACATGACCGTCGACGGCCAACCCGCTAGACGCATCGTCTTCGAGCTTTATGCCGATGTCACCCCCAGAACCGCTGAGAATTTCCGTGACTTCACCGCCGGGAACGGCACCGGAGGAGAATCGATCTATGGTTCCAAGTTCGCTGACGAGAACTTCATAAAGAAGCACACCGGACCAGGAATCTTGTCCATGGCGAACGCCGATCCCGGAACCAACGGATCTCAGTTCTTCATCTGCACTGCCAAGACTGAGTGGCTCGACGGGAAGCACGTTGTGTTCGGTCAAGTTATTGAGGGATTGAACGTTGTGAAGGACATAGAGAAGGTTGGATCTGGCTCCGGCAAGACCTCGAAGCCTGTTGTGATAATTCTGGTGTTAAAGCTGAAGAGCTTTTTGAGAAAACCGGAGAGATTTGTTGGGGTTTCGGAAGAGACTACAACTGGTGTTAAGAGGCTTTATCAGATGCAAGCCAGTGGAACTCTTTTGTTCCCTGCTATTAATGTCAATGACTCTGTCATCAAGAGCAAGTTTGACAACTTGTATGGATGTCGTCACTCTCTTCCAGATGGTTTGATGAGGGCTACTGATGTTATGATTGCTGGGAAAATGGGTGTTGTCTGTGGACACAAAGATGTTTTTTGTTTTATTTTTTATTATCTTCTATGTACTTTTCTTTTCCTAAAGGTTGTTTTACTACCTACTCATTTTGGTGTTCTTGAATTGGGTTCCGTTAGAATCTTACCTCAGAGCTTTGAATTGTTGAACAATGTTAAGTCATTGATTTCACTTTCAAATTCTATCACACAATCGTCGCCATCATCATTGTTGTTGTATCCTAGTCCTAGTATGATCAACGAGGTAAGAGATGATGAAAGTGGAATTTCAAATGGTGTTCATGTTCCACCAAAGGTTGCTTTGAATTTGAACAATGGTCGTTCACATTTTAGAGAGAAACTTGCTGTTAGGAAAATGGATAGTAGCATTAACTTTCCTAGTTCTAGAAATGGTGTTTCTAGAAACTTGCTTTAA 1053 0.4302 MANPKVFFDMTVDGQPARRIVFELYADVTPRTAENFRDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANADPGTNGSQFFICTAKTEWLDGKHVVFGQVIEGLNVVKDIEKVGSGSGKTSKPVVIILVLKLKSFLRKPERFVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVIKSKFDNLYGCRHSLPDGLMRATDVMIAGKMGVVCGHKDVFCFIFYYLLCTFLFLKVVLLPTHFGVLELGSVRILPQSFELLNNVKSLISLSNSITQSSPSSLLLYPSPSMINEVRDDESGISNGVHVPPKVALNLNNGRSHFREKLAVRKMDSSINFPSSRNGVSRNLL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1120 350 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 138 IPR002130 GO:0000413|GO:0003755
Psa6g1120 350 Gene3D - 193 221 - -
Psa6g1120 350 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 187 220 IPR015878 -
Psa6g1120 350 Gene3D - 40 134 IPR029000 -
Psa6g1120 350 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 139 186 - -
Psa6g1120 350 Gene3D - 1 39 IPR029000 -
Psa6g1120 350 Pfam S-adenosyl-L-homocysteine hydrolase 137 277 IPR000043 -
Psa6g1120 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 187 220 IPR036291 -
Psa6g1120 350 SUPERFAMILY Cyclophilin-like 2 131 IPR029000 -
Psa6g1120 350 Gene3D - 135 192 IPR042172 -
Psa6g1120 350 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 38 131 - -
Psa6g1120 350 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 38 - -
Psa6g1120 350 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 45 131 IPR002130 GO:0000413|GO:0003755
Psa6g1120 350 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 1 38 - -
Psa6g1120 350 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 38 131 - -
Psa6g1120 350 SMART AdoHcyase_2 4 347 IPR000043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1120 Psa-Chr6 43558895 43560381 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1120 23 117 U-box Gene Family AT5G67530 40.000 3.14e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1120 K01802 - gmx:100787030 229.95