Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1117 ATGAAGGAGGGAAGAGGTTATGCAAAAGGGTATTCCGTTAATTTGTTGCTACTATTGAGTTTACTCTTTTGTAGCACAGAAGGGTTGAATTTAGAGGGACAAATTCTCTTGGAGATCAAGAATGGACTTCATGATAAGTATAATCTTTTGGGAAATTGGAAATCTAGTGATGAAACTCCATGTGGCTGGGTAGGTGTAAATTGCATTTATATACATGGTAGTGGTAGTGATCCGGTGGTTGTTTCTCTTAATTTGAGTTCTATGGATCTTTCTGGAACTCTAAACGGTAGCGTTGGGGGTCTTAACAAGTTAACTTATCTCAATCTTGCTTATAATGGTTTTATTGGGAATATCCCGAAGGAGATTGGTGAGTTATTGAGTTTGGAATATCTTTACTTGAACAATAATCAATTTGAGGGACCGATTCCGGTTGAATTAGGTAAGTTGTCTGTTTTGAAAAATTTGAATATTTGCAACAATAAACTCTCTGGTGTTCTTCCGGTCGAGTTTGGAAACCTGTCTTCTTTGGTTGAGTTAGTTGCTTTTAGCAACTTTCTCGTTGGCCCGTTGCCTAATTCTGTTGGAAATCTTGAGAATCTCGTGACTTTCAGAGCTGGGGCGAATAACATTACTGGTATCTTGCCGGAAGAAATTGGCAGATGTAGGAGCTTGGTACGTCTAGGTCTTGCTCAAAATCAAATCGAAGGGGAGATACCGAAGGAGATTGGGATGCTCGAAAACTTAAAAGAATTGGTTTTATGGGAAAACAAGTTATCAGGAGTTGTTCCTAAAGAGCTTGGGAATTGTAGCAGGCTTGAGATCCTTGCTTTATACGGGAATAGTTTTGTTGGACCGTTACCTCATGAGATTGGAAACCTGAAATCGTTGAAGTGGTTGTATCTTTACAGAAATAAGTTGAACGGATCCATTCCAAGGGAAATTGGAAATCTTTCTTCAGCTTTACACATTGATTTCTCAGAGAACTCGTTGGCAGGCGATATTCCATCGGAGTTCAGCAAAATCCGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAATCATCTAACTGGTGTGATACCAAATGAGTTTGGTAGCTTGAAGAACTTGACGAAGCTGGACCTGTCGATAAATAATCTTACCGGTCTGATTCCTTCCGGTTTTCAATATTTGACTCATATGTATCAGCTGCAACTTTTCGACAACAACCTAAGTGGTGTTATTCCTCAGGGACTTGGACTTTATAGTCGTCTTTGGGTGGTTGATTTTTCCGACAACAACTTGACGGGAAATATCCCTCCTTATCTATGCCGAAACTCTCATTTGATGCTGTTGAATCTCGCCGATAATCAGCTTTATGGAAACATACCAACAGGTATATTGAACTGTGAATCATTGGCACAGTTGCTTTTGGTCGGTAACAGGCTAACTGGTGGTTTCCCTTCGGAATTGTGTAAACTTGAGAACCTTACCGCCATTGATTTGAATGATAACAGGTTTACCGGTCCGCTTCCTCGTGAGATTGCAAACTGCCACAATTTGCAAAGGCTTCATATTGCAAACAATTACTTCACATTGGAGTTGCCGAAGGAAATAGGAAATCTCTCTCAATTGGTGACTTTTAATGTTTCTTCTAATCTTTTCACCGGAAGAATCCCTCCTGAAATTTTTTGGTGCCAGAGGCTGCAGCGGCTTGATCTCAGTCAGAACCGTTTTACTGATTCGTTGCCGAATGAAATTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCAGACAATAAATTGTCTGGAACTATTCCTGCTGCATTAGGCAATCTGTCTCATTTGAACTGGCTGCTTATGGACGGTAATTTGTTTTTCGGCGAAATACCTCCTCAGCTGGGTTCTCTTTCGAGCTTACAGATAGCAATGGATCTCAGTTACAATAATCTTTCTGGTAGAATACCGTCTCGGCTTGGCAATCTCAATATGCTTGAATATCTCTTTCTCAATAACAACCAATTGGATGGCGAAATTCCGAGTACCTTTAGCGCACTTTCTAGCTTGATGGGATGTAACTTCTCATACAATAACCTCTCTGGACCTATCCCTTCTACTAAAATTTTCGAAAGTATGGCTTTAAGCAGCTTTGTTGGTGGTAACATAGGCCTTTGCGGTACACCTCTCGTTGACTGCAATAGCTTTTCAGCTTCTCGCTCTATTCCCTCGGCGAAAGACGGTGATTCTTCGCGTGCCAAAGTTGTCATGATCATTGCAGCTACTGTTGGTGGTGTTTCTCTCGTTTTGATTATAGTTATTTTATATTTAATGAGACGACCCCGGGAGCCTGTTGATTCCTTTGTAGACCCCGAAACTCTCTCGCCAGATTCGGATATCTATTTCCCTCCAAAAGACGGTTTCACATTTCAAGACCTACTTGAAGCTACAAAAAGATTTCATGAAAGTTATGTCATCGGTAGTGGAGCATGCGGAACGGTTTATAAAGCAGTGATGAAATCCGGTAAGACAATTGCTGTTAAGAAGCTAGCGTCGAACCGGGAAGGGAACAACGTCGATGACAGTTTCAGGGCTGAGATATCGACACTAGGAAGGATAAGGCATCGGAACATAGTGAAACTGTATGGTTTTTGTTACCATCAAGGTTCCAATCTCTTACTTTATGAATACATGGAACGAGGTAGCTTAGGTGAATTATTGCACGGTTCTGCAAGTAATTTAGAGTGGCCAACTCGATTCATGATTGCTCTCGGAGCTGCTGAAGGCCTCGCTTACTTGCATCATGACTGTAAACCGAAGATTATTCACCGGGATATAAAATCTAACAACATCCTTCTAGATGAAAATTTTGAGGCTCATGTTGGTGATTTTGGCTTGGCGAAAGTGATAGACATGCCTCAGTCAAAGTCGATGTCCGCAGTCGCTGGATCTTATGGATATATTGCTCCGGAATATGCATATACCATGAAGGTTACCGAGAAGTGTGACATATACAGTTACGGCGTTGTGCTGTTGGAATTGCTAACCGGAAAATCTCCAGTTCAACCGATGGAGCAAGGAGGCGATCTTGTTACATGGACGAGAAACCATATTCGGAACCATAACAATACGTTGAGCTCAGAGATACTCGATACTCGTCTTGATCTTGAAGACCAAATCACTATAAACCACATGCTCACTGTTCTGAAACTTGCTTTAATGTGCACAAGTATGTCTCCTACTAAGCGTCCGTCAATGCGCGAAGTTGTGTTGATGCTCATCGAGTCGAATGAGCGAGAAGGAAACTTAACACTTACTCGAACAAACCATGATCCTCCTCCTTCTAAAGATAACACATGA 3333 0.414 MKEGRGYAKGYSVNLLLLLSLLFCSTEGLNLEGQILLEIKNGLHDKYNLLGNWKSSDETPCGWVGVNCIYIHGSGSDPVVVSLNLSSMDLSGTLNGSVGGLNKLTYLNLAYNGFIGNIPKEIGELLSLEYLYLNNNQFEGPIPVELGKLSVLKNLNICNNKLSGVLPVEFGNLSSLVELVAFSNFLVGPLPNSVGNLENLVTFRAGANNITGILPEEIGRCRSLVRLGLAQNQIEGEIPKEIGMLENLKELVLWENKLSGVVPKELGNCSRLEILALYGNSFVGPLPHEIGNLKSLKWLYLYRNKLNGSIPREIGNLSSALHIDFSENSLAGDIPSEFSKIRGLSLLFLFENHLTGVIPNEFGSLKNLTKLDLSINNLTGLIPSGFQYLTHMYQLQLFDNNLSGVIPQGLGLYSRLWVVDFSDNNLTGNIPPYLCRNSHLMLLNLADNQLYGNIPTGILNCESLAQLLLVGNRLTGGFPSELCKLENLTAIDLNDNRFTGPLPREIANCHNLQRLHIANNYFTLELPKEIGNLSQLVTFNVSSNLFTGRIPPEIFWCQRLQRLDLSQNRFTDSLPNEIGTLQHLEILKLSDNKLSGTIPAALGNLSHLNWLLMDGNLFFGEIPPQLGSLSSLQIAMDLSYNNLSGRIPSRLGNLNMLEYLFLNNNQLDGEIPSTFSALSSLMGCNFSYNNLSGPIPSTKIFESMALSSFVGGNIGLCGTPLVDCNSFSASRSIPSAKDGDSSRAKVVMIIAATVGGVSLVLIIVILYLMRRPREPVDSFVDPETLSPDSDIYFPPKDGFTFQDLLEATKRFHESYVIGSGACGTVYKAVMKSGKTIAVKKLASNREGNNVDDSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASNLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKSPVQPMEQGGDLVTWTRNHIRNHNNTLSSEILDTRLDLEDQITINHMLTVLKLALMCTSMSPTKRPSMREVVLMLIESNEREGNLTLTRTNHDPPPSKDNT* 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1117 1110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Psa6g1117 1110 SMART LRR_sd22_2 125 146 - -
Psa6g1117 1110 SMART LRR_sd22_2 365 391 - -
Psa6g1117 1110 SMART LRR_sd22_2 293 319 - -
Psa6g1117 1110 SMART LRR_sd22_2 654 680 - -
Psa6g1117 1110 SMART LRR_sd22_2 581 607 - -
Psa6g1117 1110 SMART LRR_sd22_2 485 511 - -
Psa6g1117 1110 ProSiteProfiles Protein kinase domain profile. 811 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1117 1110 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 12 1095 - -
Psa6g1117 1110 PRINTS Leucine-rich repeat signature 368 381 - -
Psa6g1117 1110 PRINTS Leucine-rich repeat signature 581 594 - -
Psa6g1117 1110 SMART LRR_typ_2 245 268 IPR003591 -
Psa6g1117 1110 SMART LRR_typ_2 581 605 IPR003591 -
Psa6g1117 1110 SMART LRR_typ_2 654 677 IPR003591 -
Psa6g1117 1110 SMART LRR_typ_2 293 317 IPR003591 -
Psa6g1117 1110 SMART LRR_typ_2 533 557 IPR003591 -
Psa6g1117 1110 SMART LRR_typ_2 365 388 IPR003591 -
Psa6g1117 1110 SMART LRR_typ_2 125 149 IPR003591 -
Psa6g1117 1110 SMART LRR_typ_2 485 509 IPR003591 -
Psa6g1117 1110 Gene3D Ribonuclease Inhibitor 28 185 IPR032675 -
Psa6g1117 1110 SUPERFAMILY Protein kinase-like (PK-like) 792 1084 IPR011009 -
Psa6g1117 1110 Gene3D Ribonuclease Inhibitor 598 725 IPR032675 -
Psa6g1117 1110 Gene3D Ribonuclease Inhibitor 387 502 IPR032675 -
Psa6g1117 1110 Gene3D Ribonuclease Inhibitor 286 386 IPR032675 -
Psa6g1117 1110 MobiDBLite consensus disorder prediction 1091 1110 - -
Psa6g1117 1110 Gene3D Phosphorylase Kinase; domain 1 786 888 - -
Psa6g1117 1110 Pfam Protein kinase domain 812 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1117 1110 Gene3D Transferase(Phosphotransferase) domain 1 889 1101 - -
Psa6g1117 1110 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 1095 - -
Psa6g1117 1110 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Psa6g1117 1110 Pfam Leucine rich repeat 247 306 IPR001611 GO:0005515
Psa6g1117 1110 Pfam Leucine rich repeat 343 402 IPR001611 GO:0005515
Psa6g1117 1110 Pfam Leucine rich repeat 559 617 IPR001611 GO:0005515
Psa6g1117 1110 Gene3D Ribonuclease Inhibitor 186 285 IPR032675 -
Psa6g1117 1110 Gene3D Ribonuclease Inhibitor 503 597 IPR032675 -
Psa6g1117 1110 SUPERFAMILY L domain-like 387 707 - -
Psa6g1117 1110 SUPERFAMILY L domain-like 48 403 - -
Psa6g1117 1110 SMART serkin_6 811 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1117 Psa-Chr6 43481072 43485429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1117 29 1086 Receptor kinase-like Gene Family AT4G26540 38.383 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa6g1117 Pkinase 1.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1117 - - gmx:100805792 1793.48