Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1116 ATGGGAAAGCGAGTTAGGGATAAAGAGAGTGGAATTTCTAATGGTGTGAATAACCATCATACTCATCCAGGAAGAGTTTGGGGAATTCTTCATATAATAAAGTATCATCATTGGCGTCAGGTCAAGAGAAGAATTTCACATATGAGGCCTTCTAATGGAAATCATGATTCAAGAAATGAAATTCTAGCAACTTCTGATGATTCTAGCGTTGATAGTATGACAGAGCATTTAAGGCCAAATACAGCTTTATTCAATGTTGAAGAAAATAAGCTGGTGCAAAGTACACCTAACAAGCATTCAATAAAATCAAAAATAAAAGCACTTCTTAATGAAGATACATACAAAATGAGAGGGAAACACAAGAGAAGCTCAACCTGTCCCACAAAATCGCAGCTAACTCGCATCGATTCGGTTCATCGCTTGGAAGTTGATCCCCTGAGTGAAATGCTGTTAACTGTAGAGAATCCAGAACCAGTTCTAGAAACTTTTCAAAACCATCTTGCTGCAGGAACACTGGAAGTTCTGTCACCGGTTTTCTCACATAAGAAAAACTCAATCACCAACAACAGCAATGACAAATGTGTTGAATGTGGTGCAGCTTTTTCTAGTGATCCTTTGGAAAAACATGAGGACAGGACTCATCATAAGCATCGCAATCGATCGACTGGCGAAGGCGTGCAGGAAGATAAACTGATGAACGCGAAAATACTTACAACCGATGCTTCGCCGCATCTCTTCAAGGATTTTCTTGATGCTCTTGATTTAATCAACGCAAACAAAGAGTTTCTGTTGAAATATATAAATGATCCTGGTTCTCCTTTACCATTTGAGCTTCATAATCAGTCTCACTCTCCCAATCGTAAATCGAGACGAGCCAAATCGATCTCGTTACCTGTTGGTGGATCATCTCCCGGAGCCAAGGAGGCTGAGCACATCGTAGATGAATGGCTCACTACAAAAGAAATGATAGAATCAGAAATTCAAAATTTAGAAGATTTTCACAAACCATCAACTTCTTCTTCGCCTAAACCTGATCGTGATTCGGATCAACCATCTGTTAAAAGAGATCATAACAACAACACTTCATCAGATACATCCCAAGTTTCAAACAGTGTGAAGAACAAGAACTTCAAGGATCTTAGAAAGAAGATAAAGCATATAATCGAAGAAAGCAAAAACGAAAAGCTTCGCATTACGATGGACGCTGTAGTCGACAAAATTCCTCGTGGCAACAAGTTTTCCAAAAATGTAAGGAAGTTGATGAACCATGAAAAGTTCAAACAACACAATAACCGCCAACTATCAGGCATGAGGACATGTTCTCTAAAAGAATCGGTTAACCGATACACTCAGCTTTACGACACTTGTTTTCACAATGAAGTAGTTAGCAATAAGGAAGAAAAGCAGCCTAAAAATGAGAGCTTAAAGTTGAAAACCGACGAGAAAAGTTCGGTATTGAAGACACCGAAATCGTTTAAAAGGTTCCTTTCACTACCTAATCTAAAATCTTACTTCAACCAAAATGAGGAACATTCTGTTATCTTATCTCCTCAGAATTCAACTAGAAAACCCAAAGATAGAACTAGAAGCTCAAGTATACTTGATGGCTACTCAAATAGTCATATTCTCTCACCTTCACCTTCTGATCATACATATGAGGATGAACAAAAACATGTTATTCTTAAGAGTGCTTCAGATTCAGGATCAGATGTTAACGACGAGCTAAAGTCGGAAAAGAGTATAGCATTTGATGGTGTAGGAAACTTGACAGACACTGAATTTTCTGGTAGGAATGAACCAGAAATCGGTTATACAACAGAATCAAGTACTATGTTGGTTGAAGGAAACTCAGCTTTCTCTTCTGATACCAGCTTCTTAGATTGTACATTTGAGTTGGAAAACTTAAATATACTAGAAGAATCAGATCAAGAGTTAAAGCCAGTGCTAGGTGATGATGAACTGAACTATATGTATGAGCAACAAGAAGCAAAAATAGACCAATATAAAATTCCATGCAACGAAATTGATGCGAACAACGAAGCTGCGTATAATTATGTAAGAAAAGTTTTAGACCTCTCAGGTTTCACTAACAATGAATATCTTGAAACATGGTATTCTGATAACCAACCACTCGATCCATCGATTTATGAGGAGTTAGAGGGATGTTTGCTTCTTGATCCGGATTGTTCTGGCAATTGTGAAGGTGGACATTGCAATCATCTTCTTTTGTTTGATGTAATCAATGAAGGGTTGTTGGAGATTTTCGGTAGATCGTATAACTATTATCCTAGAGCATTATCTTCTCTATCTCATGTTCATCCATTGCCAAATGGAAGAGATGATGTTCTACATAAAGTATGGAAACTTATTAGTTGGTATTTGAGTTCAACTCCTGATGAGGATTATACATCATTGGATTACTATGTTAGTAAAGATCTAGCAAGAAATGACGGGTGGATGAATCTTCAATTTGATTCTGAATGTGTTGGGCTTGAGATCGATGATTTGATTTTCGATGATCTTTTGGACGATATTATCTACACTTAA 2547 0.3738 MGKRVRDKESGISNGVNNHHTHPGRVWGILHIIKYHHWRQVKRRISHMRPSNGNHDSRNEILATSDDSSVDSMTEHLRPNTALFNVEENKLVQSTPNKHSIKSKIKALLNEDTYKMRGKHKRSSTCPTKSQLTRIDSVHRLEVDPLSEMLLTVENPEPVLETFQNHLAAGTLEVLSPVFSHKKNSITNNSNDKCVECGAAFSSDPLEKHEDRTHHKHRNRSTGEGVQEDKLMNAKILTTDASPHLFKDFLDALDLINANKEFLLKYINDPGSPLPFELHNQSHSPNRKSRRAKSISLPVGGSSPGAKEAEHIVDEWLTTKEMIESEIQNLEDFHKPSTSSSPKPDRDSDQPSVKRDHNNNTSSDTSQVSNSVKNKNFKDLRKKIKHIIEESKNEKLRITMDAVVDKIPRGNKFSKNVRKLMNHEKFKQHNNRQLSGMRTCSLKESVNRYTQLYDTCFHNEVVSNKEEKQPKNESLKLKTDEKSSVLKTPKSFKRFLSLPNLKSYFNQNEEHSVILSPQNSTRKPKDRTRSSSILDGYSNSHILSPSPSDHTYEDEQKHVILKSASDSGSDVNDELKSEKSIAFDGVGNLTDTEFSGRNEPEIGYTTESSTMLVEGNSAFSSDTSFLDCTFELENLNILEESDQELKPVLGDDELNYMYEQQEAKIDQYKIPCNEIDANNEAAYNYVRKVLDLSGFTNNEYLETWYSDNQPLDPSIYEELEGCLLLDPDCSGNCEGGHCNHLLLFDVINEGLLEIFGRSYNYYPRALSSLSHVHPLPNGRDDVLHKVWKLISWYLSSTPDEDYTSLDYYVSKDLARNDGWMNLQFDSECVGLEIDDLIFDDLLDDIIYT* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1116 848 PANTHER TRM32-LIKE PROTEIN (DUF3741) 1 848 - -
Psa6g1116 848 MobiDBLite consensus disorder prediction 333 377 - -
Psa6g1116 848 MobiDBLite consensus disorder prediction 205 227 - -
Psa6g1116 848 MobiDBLite consensus disorder prediction 280 309 - -
Psa6g1116 848 MobiDBLite consensus disorder prediction 512 554 - -
Psa6g1116 848 PANTHER PROTEIN TRM32 1 848 IPR044257 -
Psa6g1116 848 Pfam Protein of unknown function (DUF3741) 230 272 IPR022212 -
Psa6g1116 848 Pfam Domain of unknown function (DUF4378) 683 844 IPR025486 -
Psa6g1116 848 MobiDBLite consensus disorder prediction 355 374 - -
Psa6g1116 848 MobiDBLite consensus disorder prediction 531 547 - -
Psa6g1116 848 MobiDBLite consensus disorder prediction 338 354 - -
Psa6g1116 848 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1116 Psa-Chr6 43455655 43459235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1116 240 838 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 34.066 3.69e-82 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1116 - - gmx:100807303 885.174