Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1113 ATGGAGGAGGATATGGAACTTGTTCCGATTGTCGATGTTCCTGATACCCCAGATAGATCAAATGTTAGAAACAATGATCGAAAATGTGTAGGTAATCCCGAGAACAGGGAGAGGGCTTTTCCTATTGCTGGTGAAATGAGTAACTGCAGCAAGTATATAATATTGTCCCCTGATAAACCTAATCATTCTCAAAAGTCTTCCATATTTAGGAGAGCCCAAACCGAGAAAGTTTTTGGACTTGGAACATCACGCTCTAGTGGAGCTGAAAAGATGGAGAAAGGGAAAACTGTGAGCTCTATGATTCCTTCTAAGTCATCTCACCATCAGGGCATTCCTGTATTCGATTTGACTGAAGAGAATGGGCAGTTGCCACAACCAAAGCAAGCTTTCTTACATCGTGGATCAAGAGATAACACAATTGAAGACAAGAAAGAATTGAAAGCAAGTATTGGGAACTCCTCGTTACCCTCAATCACTGATTATTCTAATAAATCTAGAAATGCCGCCACTGGAAAGTGTAAACTAGATAACAAAACACTTCCAGGTCCTCATCTATTTATGGATCGTGGCAAGAGCATTTCTCTGTCCAATGATTCTCAATCTCAATCAAAAGGTGAAAAGCAAGTTTCTTTGCCTCCTCGTTTTTCCACTGCTCCAGGAGGTAGAGGGCACAAGAGATTGGTACGAAATGGTTGCATTTCACCACAAAATATTGCAACAAGGGCAAAACAATCAGCTGAACAAAGCAGTTCTGAAACCAATAATGTTGAACAGATCTGTACTGGGCCTTCAGCTTCTAGCAATATAATATCTCCAATTAGTGTTGATGATATTGTTGCTGAAGATAGAGTCCATGGTAGAGTGAAAGGAAAGGGGTTACTTATTCATCCTTCATCACATGGAGCTAATGCTGGAACTATTCACATCGATAGCAGCCCCGTGGTCAATTATGAAGAGGCCAGTGGTAGCCGTAATAAACCAAGAAATTCATTTGAAAACCGGGAGACACAAGGTGGTTGGAGAACTACACATAACGATCAACATTTGTATGGTGTGGATGGGCATCATTCAAGGAATAATTATAATGGTGAGAGATTTGTTCACAAATGTAATATGAACAGACTGGACAGAAGTGACACTGGGAGCAGTCAAAATGGTAAGCATATTTCTGTCTCTCTATCTGATCATACACCTCAACCCGCTTCGCTGATTAATCCAGATGTTGGTCAGTCAGCTAGACCTAGTATTACGGCTGACTCGCTGACTAAAAGGCAAAGGAAGCCTGAATCATCTTTTAGAAATCCTAATGTAGCATCTCATAACTCTGGAACTATAGTGGTCAATTCATCTGGGGAATCATCAAGTTCATCCAGCCGTGTCTTGGCTCCTGAATTTGTTGAGCTGTTATCCATACCAAGTTTCACCAACGGACTTAATGAAGGTGTAAATCACAATGACAACAATAGTTCGGTTGCCCGGGCAATGCAATTAGAAGCAGATGAGATATTGGCACGTGAACTCCAAGAACAACTGTATAATGATGACTATTTTGAAAGCAGTTGGATTGATGAACATTTAGCACGGGAGCTGCAGGATGCAGGGGATCTTCTGCCCACATCTACTGATAATCATCAGATACCTCATCCTACACGGATTTCGAGGGGAAATAGACAGCCCCGTTTTCGGCCTCATCAAAATCCTTCAAATAGGAGAGCTTTTCCCCAAGTTCCTCTCTCTAATAGAGCCTCACAGACTAGGAGCCGTATGACAACTAGATCGTCAAGACCTACCGTATCATCTAGAGGAAGACGCCCCCGGTTTCCTATAGATATGGACCTAGACATGAGACTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATTTTAATGACATGGGAATGGCGGATAACATCCTTAATGGTCATCGTGATTTCAACGAAGATGATTATGAAATGTTATTGGCTCTTGATGATCAAAACCACCAGCATACTGGTGCATCTACCAATCTGATCAATAGCTTGCCTCAGTCCACCGTCCAGAATGACAACTTCACAGAGAATTGTGCCATTTGTATTGAGACCCCTGTCAAGGGCGATATTATTCGCCACCTTCCTTGTTTGCATAAATTTCACAAAGACTGTATTGATCCTTGGCTTGGTAGGAAAAGGTTGTGCCCGGTCTGCAAATCATCAATCACATAG 2205 0.419 MEEDMELVPIVDVPDTPDRSNVRNNDRKCVGNPENRERAFPIAGEMSNCSKYIILSPDKPNHSQKSSIFRRAQTEKVFGLGTSRSSGAEKMEKGKTVSSMIPSKSSHHQGIPVFDLTEENGQLPQPKQAFLHRGSRDNTIEDKKELKASIGNSSLPSITDYSNKSRNAATGKCKLDNKTLPGPHLFMDRGKSISLSNDSQSQSKGEKQVSLPPRFSTAPGGRGHKRLVRNGCISPQNIATRAKQSAEQSSSETNNVEQICTGPSASSNIISPISVDDIVAEDRVHGRVKGKGLLIHPSSHGANAGTIHIDSSPVVNYEEASGSRNKPRNSFENRETQGGWRTTHNDQHLYGVDGHHSRNNYNGERFVHKCNMNRLDRSDTGSSQNGKHISVSLSDHTPQPASLINPDVGQSARPSITADSLTKRQRKPESSFRNPNVASHNSGTIVVNSSGESSSSSSRVLAPEFVELLSIPSFTNGLNEGVNHNDNNSSVARAMQLEADEILARELQEQLYNDDYFESSWIDEHLARELQDAGDLLPTSTDNHQIPHPTRISRGNRQPRFRPHQNPSNRRAFPQVPLSNRASQTRSRMTTRSSRPTVSSRGRRPRFPIDMDLDMRLDILEALEDAVGDFNDMGMADNILNGHRDFNEDDYEMLLALDDQNHQHTGASTNLINSLPQSTVQNDNFTENCAICIETPVKGDIIRHLPCLHKFHKDCIDPWLGRKRLCPVCKSSIT* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1113 734 MobiDBLite consensus disorder prediction 319 346 - -
Psa6g1113 734 Pfam Ring finger domain 688 730 IPR001841 -
Psa6g1113 734 MobiDBLite consensus disorder prediction 194 210 - -
Psa6g1113 734 SMART ring_2 689 729 IPR001841 -
Psa6g1113 734 ProSiteProfiles Zinc finger RING-type profile. 689 730 IPR001841 -
Psa6g1113 734 CDD mRING-H2-C3H2C2D_ZSWM2 688 730 - -
Psa6g1113 734 MobiDBLite consensus disorder prediction 431 458 - -
Psa6g1113 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 734 IPR013083 -
Psa6g1113 734 PANTHER - 491 732 - -
Psa6g1113 734 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 491 732 - -
Psa6g1113 734 MobiDBLite consensus disorder prediction 84 106 - -
Psa6g1113 734 MobiDBLite consensus disorder prediction 319 344 - -
Psa6g1113 734 MobiDBLite consensus disorder prediction 377 419 - -
Psa6g1113 734 MobiDBLite consensus disorder prediction 194 221 - -
Psa6g1113 734 MobiDBLite consensus disorder prediction 377 458 - -
Psa6g1113 734 MobiDBLite consensus disorder prediction 540 606 - -
Psa6g1113 734 MobiDBLite consensus disorder prediction 559 600 - -
Psa6g1113 734 SUPERFAMILY RING/U-box 676 733 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1113 8 734 C3H Transcription Factor Family AT1G04790 33.680 9.19e-84 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1113 - - cam:101513161 912.909