Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1111 ATGGCAGCTTCTATGAAATGGTTTCTCAATTTGTTGTTACTTTTTGTGCTGCTCGTTGAAGAAGAAGCTATGGCTTCTACACAGATCTCTCAGTTCAGCAATGTGGATACTGAGACACACAGGTTAACAAGCTTTAACGATTCATCAATGGCGGCAAGGCAAAAAGAAGCTGAGAAATTGAATGAGCGTGCTGCCGTGGCTGATCCAAAGGAGGTCGTTTCTATGGTTGAGATGCACATTAAGAACAGTACTGAAAGAAGAACCTTGGATATTTCTCGTGCGGAACGGAATAGGAAGCGTCTGGCAGATTGTGGTATTGGTTTTGGAAGAAATGCTATCGGTGGTCGCGATGGAAAGTTCTATGTTGTCACTGACCCGAGAGACGACGACCCTGTTAACCAAGGCCGGGAACTTTGCGTCACGCTGTTTATCCAAGATAGGCCATTTGGATTGTGTTTCAAGAGGGACATGGTTATTCAGTTGAAACAAGAGCTGATTATGAACAGTTTCAAGACTATTGATGGAAGAGGAGCAAACGTACATATTGCAAATGGAGCGTGCATTACGATTCAGTATGTTACTAATGTTATCATTCATGGTCTTCATATTCACGACTGTGTTCCTACTGGTAATGCTATGCCCACAATCAACAGCCAGGGTAACAGATACAATGCTCCTGTTAACCCTTTTGCCAAAGAGGTAACTAAGAGAGTGGAAACAGCTGAAAGCCAATGGAAAGGTTGGAATTGGAGATCAGAGGGAGATTTGTACCTAAATGGTGCATACTTCACAGCATCCGGTGCTGGAGCTTCAGCTAGCTATGCAAGAGCCTCAAGCTTAGGAGCAAAATCTTCAGCCATGGTTGGCACCATGACATCAAATGCTGGTGCACTAGGTTGCAAAAGAGGCCGTCAGTGCTAA 921 0.4419 MAASMKWFLNLLLLFVLLVEEEAMASTQISQFSNVDTETHRLTSFNDSSMAARQKEAEKLNERAAVADPKEVVSMVEMHIKNSTERRTLDISRAERNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNQGRELCVTLFIQDRPFGLCFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVIIHGLHIHDCVPTGNAMPTINSQGNRYNAPVNPFAKEVTKRVETAESQWKGWNWRSEGDLYLNGAYFTASGAGASASYARASSLGAKSSAMVGTMTSNAGALGCKRGRQC* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1111 306 PRINTS Pollen allergen Amb family signature 104 121 IPR018082 -
Psa6g1111 306 PRINTS Pollen allergen Amb family signature 128 153 IPR018082 -
Psa6g1111 306 PRINTS Pollen allergen Amb family signature 164 180 IPR018082 -
Psa6g1111 306 PANTHER PECTATE LYASE 18-RELATED 11 213 IPR045032 GO:0030570
Psa6g1111 306 PANTHER PECTATE LYASE 18-RELATED 212 303 IPR045032 GO:0030570
Psa6g1111 306 SUPERFAMILY Pectin lyase-like 95 210 IPR011050 -
Psa6g1111 306 PANTHER PECTATE LYASE 212 303 - -
Psa6g1111 306 PANTHER PECTATE LYASE 11 213 - -
Psa6g1111 306 SUPERFAMILY Pectin lyase-like 214 299 IPR011050 -
Psa6g1111 306 Gene3D - 81 212 IPR012334 -
Psa6g1111 306 Gene3D - 213 299 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1111 Psa-Chr6 43091387 43095009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1111 210 306 Polysaccharide Lyase AT1G04680 78.351 2.02e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1111 K01728 - gmx:100808253 286.96