Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1095 ATGGAAGCCCTTGGTTCTGTGGATGACCTTTTGGATTTCTCATCTGACATAGGCGAGGATGATGACGACAACACCAAGAAATCCTTTCCTTCACTTAAACCAAAATGTGGTGATCCACTGTCACTTGATCCATTGGGCTTGGACGATCCAAATTCATTTTCTGAGTGTGCAGAAGAAGAGCTTGAATGGCTATCCAACAAAGATGCGTTTCCGGCGGTTGAAACATTTGTTGACTTAGCCTGTATTCAACCAGATATCATGAAGTATCAAAGGACGGCGCCGATGCTGGAGAACAGCACAAGCAGTAGCAACAGCAATAACAGTAGCAACAGCATTACCCTCCTAAGTGGCTACAATCACATAAAGTTCCCTGTCCGTGCACGGAGCAAATCTCGCAGTAAGCCTCGCCTTGGCCTTGCTGACACCTCTAACCAGCACTTCTCGTGGAGACTACCGAGTAACAAAGTTTCAAAAGAACGAGCGGTACAAACCTTGACCATTGGGAGGAAATGTAATCACTGCGGAGCCGAAAGTACTCCTCAATGGCGGGCAGGTCCAAATGGTCCCAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGGCGACTTGTGCCTGAATACCGCCCTGCAAATAGCCCAACTTTTCGCAGTGACGTGCATTCTAATTCCCACAGGAAAGTACTGGAGATGAGGAAGCATAAGGGAATGGGTTGA 720 0.4708 MEALGSVDDLLDFSSDIGEDDDDNTKKSFPSLKPKCGDPLSLDPLGLDDPNSFSECAEEELEWLSNKDAFPAVETFVDLACIQPDIMKYQRTAPMLENSTSSSNSNNSSNSITLLSGYNHIKFPVRARSKSRSKPRLGLADTSNQHFSWRLPSNKVSKERAVQTLTIGRKCNHCGAESTPQWRAGPNGPKTLCNACGVRFKSGRLVPEYRPANSPTFRSDVHSNSHRKVLEMRKHKGMG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1095 239 SMART GATA_3 165 215 IPR000679 GO:0006355|GO:0043565
Psa6g1095 239 ProSitePatterns GATA-type zinc finger domain. 171 196 IPR000679 GO:0006355|GO:0043565
Psa6g1095 239 Gene3D - 166 236 IPR013088 GO:0006355|GO:0008270
Psa6g1095 239 PANTHER GATA TRANSCRIPTION FACTOR 1 7 236 - -
Psa6g1095 239 Pfam GATA zinc finger 171 204 IPR000679 GO:0006355|GO:0043565
Psa6g1095 239 PANTHER GATA TRANSCRIPTION FACTOR 7 236 - -
Psa6g1095 239 MobiDBLite consensus disorder prediction 1 33 - -
Psa6g1095 239 CDD ZnF_GATA 170 218 IPR000679 GO:0006355|GO:0043565
Psa6g1095 239 ProSiteProfiles GATA-type zinc finger domain profile. 165 201 IPR000679 GO:0006355|GO:0043565
Psa6g1095 239 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1095 Psa-Chr6 42488041 42491094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1095 1 239 C2C2-Gata Transcription Factor Family AT3G24050 40.876 5.89e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa6g1095 GATA 1.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1095 - - mtr:MTR_5g007600 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1095 6 42488041 42491094 Psa6g1095 6 42488041 42491094 ECH