Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1064 ATGCCCGCGTCTTTGCAGAAAATGGCGCACTCCAGCACGAGCTCCGGCGGCAACTACAACGGCTCTGCCGTTTCTGAGTTTCCGGCCGGTTTAAGAGTTCTCATCGTCGATGATGACGTCACCACCTTGAAGATTATCGAGCGAATGTCTCTTCGCTGCCATTATCGCGTCACAACATGCTCTGAGGCTACTGTTGCTTTGAAAATTCTGCGGGAGAGGAAAGGCTGTTTTGATGTTGTGCTGAGTGATGTTCATATGCCAGATATGGATGGCTATAAACTCCTTGAACATGTTGGCTTGGAAATGGACCTTCCTGTTATTATGATGTCTGTTGATGATAGGACAAGTACTGTCATGAAGGGAATTAGACACGGGGCTTGTGATTATTTTATTAAGCCTGTACGGTTGGAAGAACTAAGGAATATATGGCAGCATGTTGCCAGGAAGTTTTTGAATGAACACAAGGAACACGATGATTTTGGCAGTATAGATGATAATGACCGTAATGCACGAGGGAACGATGATAATGATAATAATTCTTATGTTGTTGGTACAACAAAAGGAATAGTTAAAGAACAAAAAAAGAGGAGCAATTTAAAAGATGAAGTAGATGTTGAATTGGAGAATGATGATTTATCTACATCTAAGAAGGCTCGTGTCGTGTGGTCAGTTGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTAGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCACTGGTCTGACAAGAGAAAATGTTGCAAGTCATTTGCAGAAATTTAGACTTTATTTGAAACGATTAAGTGGAGTGGCACAGCAACAAAATGGGATGCTAAACAGAGTTCCTGGGACTATAGAATCCAAGCTAGCTGCTACTGGAAGATATGACATAGAAACTTTGGTTGCTTCTGGCCATGTTTCCCCTGAAACACTTGCAGCCCTTCAAGCTGAGCTCTTAGGTCACCCGGTAACTAACATAATGCCTACAGTGGACCAGACTGCACTAGTACATGCATCTGTTCACAGACCAAAACATTCTCGTGCTGATGATCCTACTGAAGCATATGGTCCGCCTCATGTAAACTTTCCTTCCAACAGTGTCAATAATTTCCCTCAGTCCATCTTTAAAGTAGATGATTCATCGTCAAGATATGGAGCATGGCCGCCATCTAATACACTTGGTTCAGTCTCAAGGGGGAGGTTAGGCATTCTGAATAATAACATGGTGATTGATTTATTGCAGCACCAACAAAAGCATCGACATCAGCAAAAACAACAGCATTTTCCGATTCATGATCAAAATCGATCAATCAATGTGCAACCATCTTGCATGGTGGTTCCTGCTCAATCTTCTGACACTTTCCAGGCAGTAAATAGTGTTGCTTCTGTCAACAAGGATTGTAGTTTTGACAGAAATGCCATTATTGATTATAGTCAATCATCAGAAAAATCTAATAATTCATCCAGTACATCTCAATATCCTGGCGGAAATACCAAAGCTACCTCTATTTCTCCACTAATGTCCTCTTTTTCAGTAGGCTCCAGCAATAGCAATATTCAGCAGAGTCAGAACTCAACTTCAACATCTGGTGCTACAAGATCTTTGCCTAGCCATCTGCCCATGGTGTTTAGACAAGTTCCATATGATATTAAATCCACTGATTCACTTGATCAATCATGTCTTAGAAATCTTGGATTTGTTGGCAAAGCTAACTGCATACCAAGTTTTGAAAATAAAATTGAGTCATCTGCAAGTGATTTTAGTCATAGGAAAGTATTCATGGCTAGCAATTGTAACACGGTGAAGGAGGAGCCAGATTTGATCAGATATCCAAATGTGGGCCACCCAGCTCTACAGAACTATCCGTCTCATGACCATTCAAGTGGATTCACATAA 1920 0.412 MPASLQKMAHSSTSSGGNYNGSAVSEFPAGLRVLIVDDDVTTLKIIERMSLRCHYRVTTCSEATVALKILRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDDRTSTVMKGIRHGACDYFIKPVRLEELRNIWQHVARKFLNEHKEHDDFGSIDDNDRNARGNDDNDNNSYVVGTTKGIVKEQKKRSNLKDEVDVELENDDLSTSKKARVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVTGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNRVPGTIESKLAATGRYDIETLVASGHVSPETLAALQAELLGHPVTNIMPTVDQTALVHASVHRPKHSRADDPTEAYGPPHVNFPSNSVNNFPQSIFKVDDSSSRYGAWPPSNTLGSVSRGRLGILNNNMVIDLLQHQQKHRHQQKQQHFPIHDQNRSINVQPSCMVVPAQSSDTFQAVNSVASVNKDCSFDRNAIIDYSQSSEKSNNSSSTSQYPGGNTKATSISPLMSSFSVGSSNSNIQQSQNSTSTSGATRSLPSHLPMVFRQVPYDIKSTDSLDQSCLRNLGFVGKANCIPSFENKIESSASDFSHRKVFMASNCNTVKEEPDLIRYPNVGHPALQNYPSHDHSSGFT* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1064 639 MobiDBLite consensus disorder prediction 521 544 - -
Psa6g1064 639 Gene3D - 25 152 - -
Psa6g1064 639 ProSiteProfiles Response regulatory domain profile. 32 147 IPR001789 GO:0000160
Psa6g1064 639 PIRSF RR_ARR_type-B 7 628 IPR017053 GO:0003677|GO:0003700|GO:0009736
Psa6g1064 639 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 217 270 IPR006447 GO:0003677
Psa6g1064 639 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 273 IPR017930 -
Psa6g1064 639 SMART REC_2 31 143 IPR001789 GO:0000160
Psa6g1064 639 CDD REC_typeB_ARR-like 33 147 - -
Psa6g1064 639 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 26 467 - -
Psa6g1064 639 Gene3D - 213 276 - -
Psa6g1064 639 SUPERFAMILY CheY-like 30 152 IPR011006 -
Psa6g1064 639 Pfam Response regulator receiver domain 33 142 IPR001789 GO:0000160
Psa6g1064 639 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 467 IPR045279 GO:0009736
Psa6g1064 639 Pfam Myb-like DNA-binding domain 219 267 IPR001005 -
Psa6g1064 639 Coils Coil 189 209 - -
Psa6g1064 639 MobiDBLite consensus disorder prediction 521 543 - -
Psa6g1064 639 MobiDBLite consensus disorder prediction 162 186 - -
Psa6g1064 639 SUPERFAMILY Homeodomain-like 214 274 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1064 Psa-Chr6 40999625 41002345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1064 20 287 Response Regulator Gene Family AT2G25180 55.762 7.11e-88 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa6g1064 Response_reg 3.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1064 - K14491 gmx:100817125 756.518