Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1028 ATGTTAGCGTCCACAATCCCAATCCTAACACCCACCTCCAACCTCAACCCTTCCCATTTCGTACCCTCAATCACATCAACCAGGGTCACATTCCCACAGTCTTCTTCCTCTTCCAAACCACACTCAAACCCCCCTCTGTTTGTCAGGTTTTGTCGTAGCACCAGTAGTAACGGTTCTCCTGACCCCGCCGTTGGTCCCGCTTCTCCGGAAATTGATGAAGTAGAAAGTGAATCATCATCTGATTTTGGTGATAGCTATGTGGCCTTGTTTGTTCGAATGCTAGGCCTAGATCATGATTCTCTTGATAGAGAACAGGCTATAACTACTCTTTGGCAATATTCACTTGGTGGAAAGAAGTGTGTTGATGATATAATGCAATTTCCTGGCTGTATTAATCTTGTTGTGAATCTCCTTAGATCGGAGTCAAGTTCGTCGAGTGAGGCTGCTGCAGGCCTTCTGCGATCGATATCTTCAATCGACATATATAGGAATTCCGTAGCTGATAGTGGAGCTATAGAAGAGATAAATGGATTGCTAACACAATCTTCCTTGGGTCCTGAGGTAAAGGTGCAGAGTTTGAATACGCTGTGGAACTTATCTGTTGACGAGAAGCTCCGCGTTAAACTAGCAAAGAGTGATATTCTTTTGTTAGCTATTAAGTACCTTGATGATGAGGATATAAAGGTGAAGGAAGCTGCTGTGAGTGTTTTGGAAAATTTAGCATTGAGCCGTGTTAACCATGATGTCATGGTTGAAGCGGGTGTTATTCCAAAATTGGCGAAATTCTTAACATTTTACTCTAAAGGATATAAAGTCATTACAAAAGAAGCAAGGAATGCATTGCTGGAACTTGTGAAGGACGACTACTACAGAATTCTTGTTATTGAGGAAGGTTTAGTTCCTGTGCCATTAATAGGTGCCGCAGCTTATAAGTCATACGCCCCACGTTTATATGAATCACCCGCATTTCCAGATGGTACGGAGATTGAAAAGACATACACAAAACCTTCTAGATATGGTGCAGCAGAAGTACTTGTCGGATTAAATGTTGATAATAATGCTATCATAGATGAAGCAAAAGCCAATGCAGTGATTGGACAGTCACAACAGCAATTCCTTGTTCGTACTGGTGCCATAGAAATGGGAGAAACGGCATCTCATTCTGAACATTCAGATGATCAGCCGCGTCATACACTTTTACATTGGATTGACGGGGTTGCTCGTTTAGTACTGATACTAGAACTAGAAGATAAGTCAGCAATACTAAGAGCTGCAGAGTCAATTGCCAGTGTATGTATCAATGAACATATGCGTATTGCATTCAAGGAGGCTGGTGCGGTAAATCAATTAATACGGCTTTTGAGTTCCAATGATGATGCAATCCAGCTGGCAGCCACTCAAGCATTGGAAGCGCTGTCTGCTAGCAACATGGTTTGCCGCTTTATTGAGGCCAAGGGCGGTGTGGATCCTTTAGTTAGTATTTTAAAATGCTCAGACATAGGCGGAGCTATTGTGGAAAAGTCTCTGAACGTACTTGCTCAGATATTAGACCCCAATAAAGAGATGCAATTGAAGTTTTATGATGGATCAGTTAATGGATCTGAGATGGAATTTGGTGGAGCCAAAAATGATGGTGGTTTAAGTAGCACCGACTCTGAGCAAGCCATATCGAAAACAAACCCAAGGAACAATCTGGACTCAATTTTCACTGCACGCCTTGTTGAGATTTTAAAGTCCTCTTCGCCCAGTTTACAAGAAAAGGCTGCATCTGTTCTAGAGTTTGTGGCATTGACTGACCCAACACTGGCTCCGATTATATCTGTGGATATTGAAAATGGCCTCAGTTCTACTTTTCAGCAAAATTTCTTGAAAGTTTCGGCAGACACAGAATCTGATGCGGAAGATCAGTTTTCAGCAGCATATGCTATTAAACTTGAAGAAGCCGGTCTTGCAATATCTGCAGCTTCCCGGTTACTGACAAGACTGCTTGACTCTCAGCAGTTTCACAACAAAATAAATTTCTCCAGTTTCATTGACACGCTCCGCAAAATTCTCAAGTCCAATATTCCTCTCCGCAGCAAAGATTGGGTAGCTGCTTGCCTAGTTAAACTAAGTTCTCTCTCTGGTTACGACACGAGTTCTAATCCGATCAATGTGGAAGTTACACTTTATGAGACGATTCCAAGACTTGTAGAACAGATCAAAACTTCATCCTCTTTAGAAGCTCAGGAAAATGCTGTTGTCGAACTAAATAGAATAGTATCTGAAGGGGTGGTAGATTCCACGGGAGCTATTATTTCTCTAGGGGCGGTGAATCCGTTGGTGAAGCTGATTGAAGAAGGAAGTGAAATAGGTGTTGAAGCAAGCTTGACAATACTGTATAATCTGAGTATGGACATTGAGAACCATGCGGTACTTGTAGCTGCTGGAGCCGTCCCTTCCTTAAAAAGAATTGTTCTTTCAGAAAAACCGCAGTGGCAAAGGGCACTTCATTTGCTCAGGAGTTTGCAGATATGA 2517 0.4227 MLASTIPILTPTSNLNPSHFVPSITSTRVTFPQSSSSSKPHSNPPLFVRFCRSTSSNGSPDPAVGPASPEIDEVESESSSDFGDSYVALFVRMLGLDHDSLDREQAITTLWQYSLGGKKCVDDIMQFPGCINLVVNLLRSESSSSSEAAAGLLRSISSIDIYRNSVADSGAIEEINGLLTQSSLGPEVKVQSLNTLWNLSVDEKLRVKLAKSDILLLAIKYLDDEDIKVKEAAVSVLENLALSRVNHDVMVEAGVIPKLAKFLTFYSKGYKVITKEARNALLELVKDDYYRILVIEEGLVPVPLIGAAAYKSYAPRLYESPAFPDGTEIEKTYTKPSRYGAAEVLVGLNVDNNAIIDEAKANAVIGQSQQQFLVRTGAIEMGETASHSEHSDDQPRHTLLHWIDGVARLVLILELEDKSAILRAAESIASVCINEHMRIAFKEAGAVNQLIRLLSSNDDAIQLAATQALEALSASNMVCRFIEAKGGVDPLVSILKCSDIGGAIVEKSLNVLAQILDPNKEMQLKFYDGSVNGSEMEFGGAKNDGGLSSTDSEQAISKTNPRNNLDSIFTARLVEILKSSSPSLQEKAASVLEFVALTDPTLAPIISVDIENGLSSTFQQNFLKVSADTESDAEDQFSAAYAIKLEEAGLAISAASRLLTRLLDSQQFHNKINFSSFIDTLRKILKSNIPLRSKDWVAACLVKLSSLSGYDTSSNPINVEVTLYETIPRLVEQIKTSSSLEAQENAVVELNRIVSEGVVDSTGAIISLGAVNPLVKLIEEGSEIGVEASLTILYNLSMDIENHAVLVAAGAVPSLKRIVLSEKPQWQRALHLLRSLQI* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1028 838 SUPERFAMILY ARM repeat 87 517 IPR016024 -
Psa6g1028 838 SMART arm_5 117 158 IPR000225 GO:0005515
Psa6g1028 838 SMART arm_5 713 755 IPR000225 GO:0005515
Psa6g1028 838 SMART arm_5 243 286 IPR000225 GO:0005515
Psa6g1028 838 SMART arm_5 202 242 IPR000225 GO:0005515
Psa6g1028 838 SMART arm_5 758 798 IPR000225 GO:0005515
Psa6g1028 838 SMART arm_5 434 474 IPR000225 GO:0005515
Psa6g1028 838 SMART arm_5 159 201 IPR000225 GO:0005515
Psa6g1028 838 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 33 837 - -
Psa6g1028 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 769 811 IPR000225 GO:0005515
Psa6g1028 838 Pfam Armadillo/beta-catenin-like repeat 434 470 IPR000225 GO:0005515
Psa6g1028 838 Gene3D - 367 537 IPR011989 -
Psa6g1028 838 Gene3D - 90 311 IPR011989 -
Psa6g1028 838 Gene3D - 572 837 IPR011989 -
Psa6g1028 838 SUPERFAMILY ARM repeat 654 828 IPR016024 -
Psa6g1028 838 MobiDBLite consensus disorder prediction 57 79 - -
Psa6g1028 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1028 Psa-Chr6 39724212 39728986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1028 87 319 U-box Gene Family AT2G23140 29.661 2.24e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1028 - - lang:109360684 1047.73