Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1025 ATGGAAAAACGGGGTAAATTGAATGATGGAAGAGTGATAGCAGTGAAGAAGCTATCACATGGTTCAAATCAAGGGAAGACACAGTTTGTTGCGGAGGCCAAGTTGTTGACCCGTGTGCAGCACCGTAATGTGGTCAATTTGTTTGGTTATTGTATCCATGGCAGAGAGAAACTTCTTGTGTATGAGTATGTCCCTCGTGAGAGCCTTGACAAGTTTCTATTCAGGTCAAAAAAGAAAGAAGGGCTAGATTGGAAACGTAGATTTGACATAATCAATGGAGTGGCAAGAGGTTTACTTTATCTTCATGAACACTCTCACAACTGCATAATCCATCGTGACATAAAAGCAGCCAACATTTTACTTGATGAAAAATGGGTTCCTAAGATTGCTGACTTTGGCTTGGCTCGTCTCTTTCCAGAGGATGAAACTCATGTCAATACACGTGTGGCTGGAACACACGGATACATGGCTCCAGAGTATTTGATGCATGGACACTTATCCGTGAAGGCAGATGTGTATAGCTATGGAGTTTTGGTGTTGGAGTTGATCACCGGCCATCGAAACTCATCCTCTGATCCGGCCTTCAATGGAGACAATCTCCTTAACTGGGCGTACAAGCTTTACAAGAAAGGGAGGTGGTTAGAAATGGTAGACCCCACAGTGGCATCCTCAGTGGAGATAACAGAACAAGTTGAAGTGTGCATTCGAGTGAGTCTATTGTGCACACAAGGAGATCCACAACTCCGTCCAACGATGGCGCGCGTGGTGTTGATATTGTCAAAGAAGCCACCAAGTCACATGGAAGAGCCAACGAGACCGGGTATACCTGGTTCTAGATACAGAAGAACAGGACCTCGCAGTCACACCCCTTTTACTACTGATGATGAGAATGATTCCTCTGCTTCACACGTTGATTCGAGCAATTATGACACTACTATTGCTACGGCTACCAGTTCTACTTCTTCTGCAACAAGAACAAGCTCTGCTACTGCACAAGCAGATTTGCGAGGGAAACGTCCAATGCTACCTTCATGA 1035 0.4483 MEKRGKLNDGRVIAVKKLSHGSNQGKTQFVAEAKLLTRVQHRNVVNLFGYCIHGREKLLVYEYVPRESLDKFLFRSKKKEGLDWKRRFDIINGVARGLLYLHEHSHNCIIHRDIKAANILLDEKWVPKIADFGLARLFPEDETHVNTRVAGTHGYMAPEYLMHGHLSVKADVYSYGVLVLELITGHRNSSSDPAFNGDNLLNWAYKLYKKGRWLEMVDPTVASSVEITEQVEVCIRVSLLCTQGDPQLRPTMARVVLILSKKPPSHMEEPTRPGIPGSRYRRTGPRSHTPFTTDDENDSSASHVDSSNYDTTIATATSSTSSATRTSSATAQADLRGKRPMLPS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1025 344 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 311 - -
Psa6g1025 344 MobiDBLite consensus disorder prediction 302 333 - -
Psa6g1025 344 PANTHER RECEPTOR-LIKE KINASE 4 311 - -
Psa6g1025 344 Gene3D Phosphorylase Kinase; domain 1 2 63 - -
Psa6g1025 344 SUPERFAMILY Protein kinase-like (PK-like) 7 275 IPR011009 -
Psa6g1025 344 Pfam Protein tyrosine and serine/threonine kinase 9 256 IPR001245 GO:0004672|GO:0006468
Psa6g1025 344 Gene3D Transferase(Phosphotransferase) domain 1 64 270 - -
Psa6g1025 344 PIRSF TyrPK_CSF1-R 66 334 - -
Psa6g1025 344 PIRSF TyrPK_CSF1-R 6 80 - -
Psa6g1025 344 ProSiteProfiles Protein kinase domain profile. 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1025 344 SMART serkin_6 1 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1025 344 MobiDBLite consensus disorder prediction 263 344 - -
Psa6g1025 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 109 121 IPR008271 GO:0004672|GO:0006468
Psa6g1025 344 CDD STKc_IRAK 4 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1025 Psa-Chr6 39624962 39630007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1025 4 275 Receptor kinase-like Gene Family AT4G11530 50.730 7.39e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa6g1025 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1025 - - mtr:MTR_1g031780 602.438