Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1019 ATGATCGAGAACGTGTGGGAAGATAATTCATGGATGTTGGATAATGTTCTTGGTCTCATCAAACTTCGTATCAAAAGAGGAATTAATCTCGCAATTCGTGATTCTACTTCCAGCGACCCTTATGTTATTGTCAACATGGATGGTGAACTGCAGAAATTGAAGACTCATGTAGTGAAAAACAATTGCAACCCTGAGTGGAACGAAGAACTAACCCTTTCGATAAGGGATGTTCATACTCCAATACTTCTCTCAGTTTTTGACAAAGACACTTTCACTATCGATGACAAAGCGGGTGATGCAGAGATAGACTTGAAACCATATGCTAATGCTGTACAGATGAAATTGGACACTCTTCCAGAAGGTTTTGTAATTACGAGGATTCAACCAAATATGACTAATTGTCTTTCTGAAGAGAGTAGTTGTATTTGGAAAGATGGGAAAGTAATCCAAGAAATGATTCTAAAATTGAGAAATGTCGAGAGTGGTGAATTGGTTGTGGAAATTGAATGGGTGGATATTCCTGGGAGTAGAGGTCTATTAGGGGGACAAAGTTAA 555 0.3838 MIENVWEDNSWMLDNVLGLIKLRIKRGINLAIRDSTSSDPYVIVNMDGELQKLKTHVVKNNCNPEWNEELTLSIRDVHTPILLSVFDKDTFTIDDKAGDAEIDLKPYANAVQMKLDTLPEGFVITRIQPNMTNCLSEESSCIWKDGKVIQEMILKLRNVESGELVVEIEWVDIPGSRGLLGGQS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1019 184 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 105 IPR035892 -
Psa6g1019 184 SMART C2_3c 19 116 IPR000008 -
Psa6g1019 184 ProSiteProfiles C2 domain profile. 1 118 IPR000008 -
Psa6g1019 184 Pfam C2 domain 20 106 IPR000008 -
Psa6g1019 184 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 14 181 IPR044562 -
Psa6g1019 184 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 14 181 - -
Psa6g1019 184 Gene3D C2 domain 14 177 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1019 Psa-Chr6 39381406 39382123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1019 52 179 C2H2 Transcription Factor Family AT1G70790 61.538 4.52e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1019 - - gmx:100788395 246.128