Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1018 ATGATGGATAACATTCTTGGTCTTCTCAAACTTCGTATCAAAAGAGGAATCAATCTTGCAATCCGTGATGCTAATTCCAGCGACCCTTATGTTGTTGTCAACATGGGTGAACAGAAGCTGAGGACTCGTGTAGTGAAAAACAATTGCAACCCTGAGTGGAACGAAGAATTAACCCTTTCAATAAGTGATGTTCATACTCCAATAAATCTGACAGTTTTTGACAAAGACACATTCTCTATGGATGACAAAGTGGGTGATGCAGAGATAGACTTGAAACCATATGCTAATGCTGTACAGATGAAATTGGATACTCTTCCAGATGGTTGTGCAATCAAGAGGGTTCAAGCAAATAGGACTAATTGTCTTGCTGAAGAGAGTAGTTGTATTTGGAAAGATGGGAAAATAGTCCAAGAAATGACTCTAAGATTGAGAAATGTTGAGAGTGGTGAATTGGTTGTGGAAATTGAGTGGGTGGATATTCCTGGTAGTGGAGGTCTATTAGGAATACAAATTTAA 516 0.3857 MMDNILGLLKLRIKRGINLAIRDANSSDPYVVVNMGEQKLRTRVVKNNCNPEWNEELTLSISDVHTPINLTVFDKDTFSMDDKVGDAEIDLKPYANAVQMKLDTLPDGCAIKRVQANRTNCLAEESSCIWKDGKIVQEMTLRLRNVESGELVVEIEWVDIPGSGGLLGIQI* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1018 171 Pfam C2 domain 8 93 IPR000008 -
Psa6g1018 171 Gene3D C2 domain 3 163 IPR035892 -
Psa6g1018 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 2 163 IPR044562 -
Psa6g1018 171 CDD C2_ArfGAP 6 149 - -
Psa6g1018 171 SMART C2_3c 8 103 IPR000008 -
Psa6g1018 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 2 163 - -
Psa6g1018 171 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 158 IPR035892 -
Psa6g1018 171 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1018 Psa-Chr6 39370623 39372045 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1018 39 166 C2H2 Transcription Factor Family AT1G70790 66.154 1.15e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1018 - - gmx:100788395 271.166