Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1016 ATGTTTCTTGGCTGTCTAAGTGGTGTTAAAATTGTTTTTGGAGTGCCATGCATTGTTGTATTATTAGTCTACAAATGGAGACAGAAACATTTATCTATATATAATGGAATAGAAGATTTTCTGCAAAGTGACAATAACATCATACCTATAAGATACTCGTACAGAGACATAAAAAAGATAACCGAAAAATTCAAAACAAAACTAGGTCAGGGAGGTTATGGATTTGTTTTTAAAGGACAACTTCGAAGTGGTCGTCTTGTAGCAGTCAAATTATTGGACAAAGCCAAGTCCAACGGTCAAGATTTTGTTAATGAAGTTGCTACTATTGGTAGGATTCACCATGTTAATGTGGTGCAACTCGTTGGTTTTTGTGTAGAGGGGTCAAAACGTGCTCTTATATATGAGTTTATGCCTAATGGATCACTTGAAAAGTACATACATTCTCATATTGAAGAGAAATATTCCTTGACTTGTGAAAAATTGTATTCCATTTCTCTTGGAGTTGCTCGAGGCATTGATTACTTGCATAATGGATGCAATATGAAGATTTTGCACTTCGACATAAAGCCTCATAATATACTTCTGGATGAAAATTTCAATCCAAAAGTTTCTGATTTTGGACTAGCTAGACTTTGTCCTACAGATAAAAGCATTGTGACATTAACTGCAGCAAGGGGGACTATTGGATACATGGCACCTGAGCTATTCTACAGAAATGTTGGTGCAATATCTTACAAAGCTGATGTGTATAGCTTTGGGATGTTGTTAATGGAGATGGCTAGTAGAAGGAAGAACTTGAATGCATTGGCTGAGCAATCCAGTCAAATTTATTTCCCTTTCTGGATTTATGATCAGTTGCGTGATGGAATGGAAGTAACAATTGAGAATGACACAAATGAAGAAGTGAAACTGGCAAAGAAAATGATGAATGTGGCTTTATGGTGTATTCAGACAAAACCTGACGATCGTCCTCCAATGGATAAAGTGTTAGAGATGCTTGAAGATGAAGATATGGATTTGAAGATGCCTAATAAACCTTATCTTTATGCAAACGATCTACCAACTGAGGATGTTAGAGACGATAATACCAACAGTTCATGGTCTTCTCTTGATTAA 1116 0.3593 MFLGCLSGVKIVFGVPCIVVLLVYKWRQKHLSIYNGIEDFLQSDNNIIPIRYSYRDIKKITEKFKTKLGQGGYGFVFKGQLRSGRLVAVKLLDKAKSNGQDFVNEVATIGRIHHVNVVQLVGFCVEGSKRALIYEFMPNGSLEKYIHSHIEEKYSLTCEKLYSISLGVARGIDYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDKSIVTLTAARGTIGYMAPELFYRNVGAISYKADVYSFGMLLMEMASRRKNLNALAEQSSQIYFPFWIYDQLRDGMEVTIENDTNEEVKLAKKMMNVALWCIQTKPDDRPPMDKVLEMLEDEDMDLKMPNKPYLYANDLPTEDVRDDNTNSSWSSLD* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1016 371 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Psa6g1016 371 MobiDBLite consensus disorder prediction 351 371 - -
Psa6g1016 371 Gene3D Transferase(Phosphotransferase) domain 1 137 345 - -
Psa6g1016 371 ProSiteProfiles Protein kinase domain profile. 62 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1016 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Psa6g1016 371 Gene3D Phosphorylase Kinase; domain 1 42 136 - -
Psa6g1016 371 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 349 IPR045874 GO:0004672
Psa6g1016 371 SMART serkin_6 62 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1016 371 Pfam Protein kinase domain 65 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1016 371 SUPERFAMILY Protein kinase-like (PK-like) 43 334 IPR011009 -
Psa6g1016 371 PANTHER INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1, PUTATIVE-RELATED 5 349 - -
Psa6g1016 371 PIRSF TyrPK_CSF1-R 68 152 - -
Psa6g1016 371 PIRSF TyrPK_CSF1-R 1 33 - -
Psa6g1016 371 PIRSF TyrPK_CSF1-R 147 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1016 Psa-Chr6 39342873 39345691 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1016 51 366 Receptor kinase-like Gene Family AT5G38280 49.533 1.19e-108 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Psa6g1016 Pkinase 9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1016 - - mtr:MTR_1g031200 620.542