Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1013 ATGTCATCCTTATCCCTTGTTATGGTGATAGTGTTACTAATACTAATAATATTCTCGAACAGGACACTGTTTCGCATTGGTGATGAACAACAACTACAACAAGAGTCGTCGTGTTCTACAAGGTGCGGTGTTCATAACATCAGCTACCCTTTCCGCTTGAAAAACAGTCCAGAGAACTGTGGTGACAAAAGCTACACGCTATCATGCGAGGACAACAACCAATTGATTTTGTACAATGATGAATCATATGGAAAATATTATGTAGAATCAATTAATTACAATAACATCACTATACGACTATTGGATTTCAATCTTCGTTCTAACAATTCACTCCCTCCTTATTATTCTTTTGGAATCTATAATTTCAGTTCTTACACCTACCAATCGTATTCTTCATACAAAAATTGGTCTCATTTAGTATTGTCAAAATCAATGTTATTTGTGAGCTGTCCAAATCGGATGGAATATTCGTACGTTGGCAACTGTATGAATATTAGTTCATACACACTGTATGGAGATCCTTTCTATGTTGGTGTTTATGGCAAAACTATTTCAGAATTGGGGTTGGGAGACGGGTGTCGTATAGAGTATATGTATCTCACTTCTTGGGATTTACAAGATGACAACAACAGCAACATTTCTTGTACCGACATCCGCCGTATGATGCTTTATGGATTTGAACTTTCTTGGTCCAACGGTCTTTGTGAAGATGGATGGTTTTTATACCTCGATGACAATAGCCAATATCGCTGTATACAGGATGTTGCAGGATTCAGGATCGATTTGGCTTATATTGTTGAATCATTATTATTTTACGCTCAAATGCTTGCTTTACTAGGCGGTGTTAAATTCGTGTTTGGAACACCATGTATAATTGTATTATTAGTCTACAAATGGCGACAGAAACATTTATCAGTGTACGATAATGTTGAAGATTTTCTACAAAGTGACAATAACATTATGCCGATAAGGTACTCTTATCGAGACATAAAAAAAATGACAAAACAATTCAAGATAAAACTAGGTCATGGAGGTTATGGATCTGTTTTCAAAGGACAGCTTCGAAGTGGTCGTCTTGTTGCTGTAAAATTATTGGACAGAGGCAAGACCAATGGCCAAGATTTTATGAATGAAGTTTCTACAATTGGTAGGATTCACCATGTTAATGTGGTGCAACTCATTGGTTTTTGTGTGGAGGGGTCAAAACGTGCTCTTATATATGAGTTCATGCCAAATGGATCACTTGAAAAATACATATTTTCTTCTCAAGAGAGTTATTCTTTGAGTTGCGAAAAATTGTATAATGTTTCTTTTGGAGTGGCTCGGGGAATTGAGTACTTACATAATGGGTGCAATATGAAAATTCTCCACTTTGACATAAAGCCTCATAACATCCTTCTTGACGAGAATTTTAATCCAAAAGTTTCTGATTTCGGACTAGCTAGATTTTATCCTACAGATAAAAGCATTGTGACCTTAACTGCGGTAAGAGGAACCATAGGATATATGGCCCCTGAATTATTCTATAGAAATGTTGGTGCAGTATCTTACAAAGCTGATGTCTACAGCTTTGGGATGTTGTTAATGGAGATGGCTAGTAGAAGAAAGAATTTGAATGCAGTGACTGAGAAATCTAGCCAAATTTATTTCCCTTTTTGGATTTATGATCAGTTACATGATGGAAAGGAAGTGACAATTGAGAATGACACAGATGAAGAAATGAAATTGGCAAAGAAAATGATGATTGTGGCTTTGTGGTGTATACAGACAAAACCCGAGGACCGTCCTTCAATGATTAAAGTGTTGGAGATGCTTGAAGAAGAAGATGGGGAGTTGCAGATTCCTAATAAACCTTACTTTTGTCTACAAGATCAACCAGTTGCAAATGTTACAGATGATAGTGTTAGTAGTTCGTAG 1917 0.3636 MSSLSLVMVIVLLILIIFSNRTLFRIGDEQQLQQESSCSTRCGVHNISYPFRLKNSPENCGDKSYTLSCEDNNQLILYNDESYGKYYVESINYNNITIRLLDFNLRSNNSLPPYYSFGIYNFSSYTYQSYSSYKNWSHLVLSKSMLFVSCPNRMEYSYVGNCMNISSYTLYGDPFYVGVYGKTISELGLGDGCRIEYMYLTSWDLQDDNNSNISCTDIRRMMLYGFELSWSNGLCEDGWFLYLDDNSQYRCIQDVAGFRIDLAYIVESLLFYAQMLALLGGVKFVFGTPCIIVLLVYKWRQKHLSVYDNVEDFLQSDNNIMPIRYSYRDIKKMTKQFKIKLGHGGYGSVFKGQLRSGRLVAVKLLDRGKTNGQDFMNEVSTIGRIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKYIFSSQESYSLSCEKLYNVSFGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARFYPTDKSIVTLTAVRGTIGYMAPELFYRNVGAVSYKADVYSFGMLLMEMASRRKNLNAVTEKSSQIYFPFWIYDQLHDGKEVTIENDTDEEMKLAKKMMIVALWCIQTKPEDRPSMIKVLEMLEEEDGELQIPNKPYFCLQDQPVANVTDDSVSSS* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1013 638 Pfam Protein kinase domain 339 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1013 638 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 258 626 - -
Psa6g1013 638 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 10 237 - -
Psa6g1013 638 SMART serkin_6 335 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1013 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Psa6g1013 638 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 237 IPR045874 GO:0004672
Psa6g1013 638 PANTHER RUST RESISTANCE KINASE LR10-RELATED 258 626 IPR045874 GO:0004672
Psa6g1013 638 SUPERFAMILY Protein kinase-like (PK-like) 315 606 IPR011009 -
Psa6g1013 638 Pfam Wall-associated receptor kinase galacturonan-binding 38 102 IPR025287 GO:0030247
Psa6g1013 638 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Psa6g1013 638 ProSiteProfiles Protein kinase domain profile. 335 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1013 638 Gene3D Transferase(Phosphotransferase) domain 1 410 617 - -
Psa6g1013 638 Gene3D Phosphorylase Kinase; domain 1 311 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1013 Psa-Chr6 39287995 39299754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1013 324 638 Receptor kinase-like Gene Family AT5G38280 51.713 6.46e-106 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Psa6g1013 Pkinase 8.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1013 - - aip:107605930 717.613