Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1012 ATGAACAGTTGTTATTATGTTATGGGATTGTTGTTGTTCATGGTTTCTTTTGTTTTTGGAACAACAATAGCCACAGCAATTAACTGTACAGATTTCTTTTGCGGAAATCAAGCTATCAGGTTCCCTTTCAGAATCAAAAACCATCAAGCACCATCGTGTGGCTACCCTGCCTTCGATTTAATCTGTTCATCAAACCAAACTATGATTCAACTTCCTAACTCAGTGAAACTCAAAGTCGACAACATTGACTACAAACACCAAACTATTCAACTTTCCGATCCACAAACTTGTATGTACAAACAGATCAAAAATCTCAATATTTCATCCACTCCGTTCAACTACTTGAAACGTGACTATGATGATTTTGTTGACTATTACTTTTTCAATTGTTCACTTTTGACTAGAAATGAGTTAAATTACTATTTGGTTCCATGTCTAAGCACTTCAACCTCTCAAACATATGTTATCCCTTCTGATTCTTTCATTGATGGCCTTCCCCTCTCTTTCTGCACCAAAATGTTTCATGTTTCATTCAAACGTTCTCATACACTAATTGATGCTCGTTTGATGTGGTCTCAGCCTGACTGTAAACATTGTGAATCAAAAGGAAACAGGTGTGGCTGGAAGAATACCACACACCACGACGAAATCGATTGTTTCGCCAAAGGTTCATCAACGACTTTACTCACCACAGGGTCGATTCTTGGATCGATGTTTTTCATCTTGTTGACTGGTGCAGTTTACCATATTTATGACATTTACATACTAAAGAAAGCAAAACAAGTGATTATAGAAAGGTTTTTGGAAGACTATAGAGCTCTTAAGCCTACTAGATACTCTTATGTTGAAATTAAGAGAATCACAAATAACTTTGGAGACAAGTTAGGAGAAGGAGCCTATGGAAGTGTGTATAAAGGAAGCATTTCAAAAGAGATTACTGTTGCTGTGAAAATATTAAACTTTTCTCAAGGAAATGGGCAGGACTTTCTCAATGAAGTTGGTACAATGGGTAGAATCCACCATGTTAATATTGCTCGATTGATCGGCTTTTGCGCTGATGGGTTTAAAAGAGCTCTTGTTTATGAGTTTTTGCCAAATGGTTCATTGCAAAAGTTCATAAATTCACCGGACAATAAGAAAAACTTTCTTGGTTGGAAAAAGATGCACGAAATTGCTTTAGGAATAGCTAAAGGAATTGAGTATCTTCATCAAGGGTGTGATCAGCGCATCCTCCATTTCGATATCAAACCACAAAACGTGTTACTTGACGATAACTTCATTCCAAAAATATCTGATTTTGGTCTAGCTAAATTATGTTCTAGAGATCAGAGCATAGTGTCCATGACTACGGCTAGAGGAACTATGGGCTACATTGCTCCCGAAGTTTTTTCAAGGAACTTTGGAAATGTGTCGTACAAATCAGATGTTTATAGTTATGGAATGATGTTGCTTGAAACAATAGGAGGAAAGAAGATCACAGAGGATTTAGAGAAAAACACTAGTCACGTTCACTATCCAGAATGGATTCATAACCTTTTAGATGATCAAGAGGAAATGAGAATCCATGTTGATGATGAAGGGGATGAAAAAATTGCAAGAAAAATGGCAATTGTGGGACTTTGGTGTATTCAGTGGCATGCTATGGATAGACCATCAATGCAAATGATTGTTCAAATGTTGGAGGGAGATGAGGACAAAACTCCAATTCCTCCCAATCCTTTTGCTTCTCGATCTAGACGGCCTAGGGGAAATGGTTCAATTGCAATTACCAGACAGCTAACACAAGACTTAGATGTAATTGAAGAGTTAGAATAA 1815 0.3708 MNSCYYVMGLLLFMVSFVFGTTIATAINCTDFFCGNQAIRFPFRIKNHQAPSCGYPAFDLICSSNQTMIQLPNSVKLKVDNIDYKHQTIQLSDPQTCMYKQIKNLNISSTPFNYLKRDYDDFVDYYFFNCSLLTRNELNYYLVPCLSTSTSQTYVIPSDSFIDGLPLSFCTKMFHVSFKRSHTLIDARLMWSQPDCKHCESKGNRCGWKNTTHHDEIDCFAKGSSTTLLTTGSILGSMFFILLTGAVYHIYDIYILKKAKQVIIERFLEDYRALKPTRYSYVEIKRITNNFGDKLGEGAYGSVYKGSISKEITVAVKILNFSQGNGQDFLNEVGTMGRIHHVNIARLIGFCADGFKRALVYEFLPNGSLQKFINSPDNKKNFLGWKKMHEIALGIAKGIEYLHQGCDQRILHFDIKPQNVLLDDNFIPKISDFGLAKLCSRDQSIVSMTTARGTMGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGKKITEDLEKNTSHVHYPEWIHNLLDDQEEMRIHVDDEGDEKIARKMAIVGLWCIQWHAMDRPSMQMIVQMLEGDEDKTPIPPNPFASRSRRPRGNGSIAITRQLTQDLDVIEELE* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1012 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Psa6g1012 604 Pfam Wall-associated receptor kinase galacturonan-binding 29 93 IPR025287 GO:0030247
Psa6g1012 604 SUPERFAMILY Protein kinase-like (PK-like) 273 561 IPR011009 -
Psa6g1012 604 Pfam Protein kinase domain 292 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1012 604 PANTHER RECEPTOR-LIKE KINASE 36 603 - -
Psa6g1012 604 SMART serkin_6 289 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1012 604 ProSiteProfiles Protein kinase domain profile. 289 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1012 604 Gene3D Transferase(Phosphotransferase) domain 1 364 568 - -
Psa6g1012 604 PANTHER RUST RESISTANCE KINASE LR10-RELATED 36 603 IPR045874 GO:0004672
Psa6g1012 604 Gene3D Phosphorylase Kinase; domain 1 265 363 - -
Psa6g1012 604 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1012 Psa-Chr6 39232169 39234751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1012 6 573 Receptor kinase-like Gene Family AT1G66910 36.207 1.69e-116 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Psa6g1012 Pkinase 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1012 - - mtr:MTR_1g031540 926.006