Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0998 ATGGAGGCGAACAACAGAGATCAAATTGTGGATGTTGGATCCGTGGTTGAAGCTGTTTCTGCTGAAGCCGGTGATGCACCTCTTTATGCCATCGAAAGCCTCTGCATGCGCTGTCATCAAAACGGAACTACAAGATTTTTGTTTACTTCAATTCCTAATTTCAGGAAGATTTTATTGTCGGCTTTTGAATGTCCTCACTGTGGTGAGAGGAACAATGAAGTGCAGTTTGCTGGGGAGATTCAACCACGTGGTTGTTGTTACTCGTTAGAGATTCCAGCGGGTGAACAAAAGATGTTCAATCGACAAGTGGTAAAATCAGAATCTGCTACCATTAAGATACCCGAACTTGAATTTGAGATTCCACCAGAGGCACAGCGTGGTAGTCTGTCAACGGTTGAAGGGATATTAATGCGAGCTGCTGATGAACTTCAGGCCCTTCAAGAGGAACGCAGAACAGCTGATGCAATAGATCAGTTCCTGGTGAAGTTGCGAGCCTGTGCCACAGCAGAATCTTCTTTCACGTTTATTATTGATGATCCTGCTGGAAACAGTTACATCGAAAATCCGTTTGCACCATCATCTGATCCATCACTCACTATCAAGTTTTATGACCGAACACCTGAGCAACAAGCATTGTTGGGATATTCTACACAGAATGAAGGAACTCGTGATGAAGTGCTGGAAAGTGGAGAAGCAGCGGCTTCTGGGAGAACGAGGAGGCAACCCCATGGGTCAGTTGGGGCAGCAGCTGGTCAACGAGCTATTGCACAAAGTAATAGTGCAGAAATCGCAGATGCCTTATTTCGATATAGTGCACCAGAAGAGGTGATGACTTTCCCGTCAACTTGTGGAACTTGTACCGCTAAGTGTGAAACTCGAATGTTTGTCACTAATATTCCATATTTTCAAGAAGTAATTGTTATGGCATCTACATGTGATGCTTGCGGTTACCGCAACTCTGAGTTAAAACCAGGTGGACGAATTCCTGAAAAAGGAAAAAAAATTACTCTTTATGTGAAAAATATTAAGGACCTGAGCCGGGATGTGATTAAGTCTGATACTGCAAGTGTACAAGTCCCTGAACTTGACTTGGAGCTGGCAAGCGGCACCATGGGAGGACTTGTTACAACTGTTGAAGGTTTAATTACACAAATCAGTGAGAGCCTTAAAAATGTCCATGGGTTTAGTCTTGGAGATAGTCTTGATGAACATAAAAGAAGCAAGTGGCTAGACTTTCAAGCAAGGCTAAACAAGCTTCTTAGCTTGGAAGAAGCTTGGACTCTAATTCTTGATGATGCATTGGCTAATTCTTTTGTAGCACCCGCAACAGATGATCTAAAAGATGACCATCAACTAACATTTGAAGAGTATGAGAGGTCATGGGAACAAAATGAAGAACTAGGTCTGAATGATATTGACACCTCTTCTGCGGATGCTGCATACGAATCAACAAACACTACTAAGATTGAGTGA 1473 0.4291 MEANNRDQIVDVGSVVEAVSAEAGDAPLYAIESLCMRCHQNGTTRFLFTSIPNFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYSLEIPAGEQKMFNRQVVKSESATIKIPELEFEIPPEAQRGSLSTVEGILMRAADELQALQEERRTADAIDQFLVKLRACATAESSFTFIIDDPAGNSYIENPFAPSSDPSLTIKFYDRTPEQQALLGYSTQNEGTRDEVLESGEAAASGRTRRQPHGSVGAAAGQRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGTCTAKCETRMFVTNIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKKITLYVKNIKDLSRDVIKSDTASVQVPELDLELASGTMGGLVTTVEGLITQISESLKNVHGFSLGDSLDEHKRSKWLDFQARLNKLLSLEEAWTLILDDALANSFVAPATDDLKDDHQLTFEEYERSWEQNEELGLNDIDTSSADAAYESTNTTKIE* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0998 490 SMART zpr1 281 441 IPR004457 GO:0008270
Psa6g0998 490 SMART zpr1 33 188 IPR004457 GO:0008270
Psa6g0998 490 Coils Coil 129 156 - -
Psa6g0998 490 Gene3D ZPR1, zinc finger domain 271 326 IPR042452 -
Psa6g0998 490 Gene3D ZPR1, zinc finger domain 25 78 IPR042452 -
Psa6g0998 490 MobiDBLite consensus disorder prediction 467 490 - -
Psa6g0998 490 Pfam ZPR1 zinc-finger domain 33 187 IPR004457 GO:0008270
Psa6g0998 490 Pfam ZPR1 zinc-finger domain 281 439 IPR004457 GO:0008270
Psa6g0998 490 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 282 473 IPR004457 GO:0008270
Psa6g0998 490 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 35 217 IPR004457 GO:0008270
Psa6g0998 490 Gene3D ZPR1, A/B domain 79 215 IPR042451 -
Psa6g0998 490 Gene3D ZPR1, A/B domain 327 469 IPR042451 -
Psa6g0998 490 PANTHER ZPR1 ZINC-FINGER DOMAIN PROTEIN 2 487 - -
Psa6g0998 490 MobiDBLite consensus disorder prediction 466 490 - -
Psa6g0998 490 PANTHER ZINC FINGER PROTEIN ZPR1 2 487 IPR040141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0998 Psa-Chr6 38324382 38336181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0998 4 489 C2H2 Transcription Factor Family AT5G22480 75.703 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0998 K06874 - gmx:100798741 824.313