Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0970 ATGCCGTCGCTACTCTCTCCAGGCAAAATCCACATGCTAGAGATAGAGAATTTCAAGTCCTACAAGGGTTTACAAAAAATTGGCCCCTTCTTTGACTTCACTGCAATCATTGGTCCTAACGGTGCCGGAAAATCTAACCTAATGGACGCAATCAGCTTCGTTCTTGGTGTTAGAACCGGCCATCTCCGTGGTGCTCAATTGAAGGATCTAATTTATGCTTTTGATGATAGGGATAAAGAGCAGAAAGGACGAAGAGCCTTCGTTCGCATGGTTTATCAACTCGCTAACGAATCCGAGATTAGGTTCACAAGAACTATTACCTCAGCCGGAGCAAGTGAGTACCGCATCGACGACAGTGTCGTTACTTGGGATGTCTACAATGGTAGACTCAAATCCCTAGGAATTCTAGTTAAGGCTCGCAACTTTTTGGTTTTTCAGGGTGATGTGGAATCCATTGCGTCTAAAAATCCTAAGGAGCTTACTGGCCTTATAGAGCAGATATCTGGATCTGACGAGCTCAAGCGAGACTATGAGGAGTTTGAAGAAGAGAAAGCTACTGCTGAGGAGAAATCAGCGCTTGTTTATCAGAAGAAAAAGACAATGGTTATGGAGAGGAAGCAGAAGAAAGAACAAAAGGAAGAGGCGGAGAAACATATCCGACTGCAAGATCAATTGAAATCTATGAAGAAAGAACATTTCTTGTGGCAGTTGTTCAATTTAGAAAATGATTTTGTTAATACAACTGAGGAACTTGAAGTTGAAAAAAGAAGTCGTGAAGGTGTTATTGAGGAGTTAGAAGAGTTTGAAAATGAAGCTAGTAAAAAGAAAAAAGAGCAAGCCAAACATCTGAAAGAAGTTACGCTACGTGAGAAGAAAATAACTGAGAAAGGCAACAAACTCGACAAGAATCAACCAGAGCTTCTTAAATTAAAGGAGGAAATGTCTCGCATTAGAAAAAAAATTGAAAAAGGGAAGAAGGAGCTTGGCAAAAAAATTGAACAACAAGGGAAGCATGACAAAGAAATAGCAAAGCTACGTAATGATATTGAGGATCTTACGGCAAAAGTGGCAGACGTGCAGGAAAAGAGTAGAAATGTTGGTGGTCAGCTCAAGTTAGATGGCAATGACTTGGAAGAATATTATAGAATAAAAGAGGAAGCTGGGATGAAAACCGCAAAGCTTAAAGAGGAAAATGAACTGTTAGATAGGCAGCAACATGCTGACACTGAAGCTCAAAAGAATTTGGAAGAGAATCTTAAACAATTAAAAAGTCGTGAGTCTGAGCTGGATTCACAGGAAAAAAAAATGCGAGAAAGGCTTAAAAAAATTCTTGATAGTTCTGCAAAGAATAAGGATGCTGTTGAAAATTTGAATACAGAACTACGTGTGATGAAAGAAAAACATAATGAGTCCAAGAGAAAATATGATTACTTGAAGATAAGAATTGGCGAAGTAGAAAAGGATCTACGCGAATTGAAGGCTGATAGACATGAAAATGAGAGAGATGCTAAATTGTCTCAGGCTGTGGCGACTCTGAAACGCTTGTTTCAAGGAGTCCATGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACTTAGCTGTTACTGTTGCTATGGGTAAATTAATGGATGCTGTTGTTGTTGAGGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGAGCAGAGGCTTCCTCCCCAGACATTTATTCCTTTACAATCTATTCGAGTGAAGCCAATAATGGAAAGATTACGCACATTAGGTGGTACAGCAAAACTGAACCTGTTTCAAGCTTTTGAACTTAACTATTGCAAGTTTGATCCCCCCTTGGAGAAGGCAATTCTATTTGCTGTTGGGAATACTCTTGTTTGCGAAGACCTTGAGAAAGCCAAACTTTTAAGCTGGAGTGGAGAGAGGTTTAAAGTTGTAACTGTGGACGGAATTTTGCTGACGAAATCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAGCAGTGGGATGACAAGAAATTTGACGCATATGTTAAGAAAAAAGAGCAGTATGAAGCGGAGCTGAAAGAGCTAGGATCAATAAGAGATATGCACCTTAAAGAGTCTGATACAGAGGGGAAAAAAAGTGGACTTGAAAAGAAAATTCAATATGCTGAGATTGAAAAGAGAAGCATTGAAGACAAACTTTCAAATTTTAGTCTCGAAAAGGGGACCATCAAAGAAGAAATTAAACGTATTAGTCCAGAACTGAAGAAGTTAGGAGATGCTGTTGAAAAGAGGAATAGAGAATTAATTACTCTTGAGAAAAGGATAAATGAAATTACTGATCGGATATACAGAGACTTCAGCAAGTCAGTTGGGGTTGCAAATATTCGTGAGTATGAAGAAAATCGACTCAAGGATGCTCAAAATGTAGCAGAGGAGAGGCTGAAGCTGAGTAGCCAACTTTCGAAGTTAAAATATCAGTTGGAGTATGAGCAAAATCGAGACATGAGTTCAAGAATTGAAGAATTGAAATCTTCCATAAGTGCTTTGGAGAATGATTTAAATCGGGTACAGGACAAAGAAGCTGAAGCAAAGTTAGCAGCAGAGAAGGCTACCGAAGCGATCAATCAGTTGAAGGATGAAGCTAAAGAGTGGAAATCGAAGTCAGAGGATTGTGAAAAGGAAATCCAGGAATGGAAGAAGAAGGCTTCTGCAGCCACAACAAACATATCCAAACTGAATCGTCAGATAAACTTAAAGGAGGCACAGATTGAGCAGATATTAAGCCAAAAGAAGGAGATATCAGAGAAGTGTGAACTAGAGCAGATTAGCCTTCCAACCATATCAGATCCTATGGATACCGATATCTCAACTCCGCCTCCAGTTTATGACTTTGATAAACTCAGTAAGCCACTAAAAGAAAGGAAACCCTCTGGCAGGGATAAAATAGAGGTAGATTTCAAGCAAAAAATGGATGCATTGATATCTGAGATAGAAAGAACAGCACCCAATTTGAAGGCATTGGACCAGTATGAGGCTCTGCTTGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTATCAGGAAAGAAGAGAAGGAGAAAGCAGATAGATTCAATGTAGTAAAGCAGAAGAGATATGATATGTTCATGGATGCTTTCAACCATATAGCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAACACACATCCTCTGGGTGGAACAGCATACCTAAATTTGGAAAATGATGATGATCCGTTTCTACATGGCATGAAGTACACTGCTATGCCACCAACAAAGCGATTCCGCGACATGGAACAACTGTCTGGTGGTGAAAAGACTGTTGCTGCACTTGCATTGCTATTCTCCATTCATAGTTTTAGGCCTTCACCATTTTTCATACTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCGAAGGTTGCTGGGTTTATTCGTTCAAAATCTTGTGAAGGAGCGAGAGTTAATCAGGATGCTGATGGCGGAAATGGTTTTCAGAGTATTGTAATATCTCTGAAAGACAGCTTCTATGACAAAGCTGAAGCGTTAGTTGGGGTTTACAGAGACTCTGGAAGAGGTTGTTCGAGTACTCTCACATTTGATCTGAGCAAGTATCAGGAGTCATAA 3672 0.3962 MPSLLSPGKIHMLEIENFKSYKGLQKIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRTGHLRGAQLKDLIYAFDDRDKEQKGRRAFVRMVYQLANESEIRFTRTITSAGASEYRIDDSVVTWDVYNGRLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEEFEEEKATAEEKSALVYQKKKTMVMERKQKKEQKEEAEKHIRLQDQLKSMKKEHFLWQLFNLENDFVNTTEELEVEKRSREGVIEELEEFENEASKKKKEQAKHLKEVTLREKKITEKGNKLDKNQPELLKLKEEMSRIRKKIEKGKKELGKKIEQQGKHDKEIAKLRNDIEDLTAKVADVQEKSRNVGGQLKLDGNDLEEYYRIKEEAGMKTAKLKEENELLDRQQHADTEAQKNLEENLKQLKSRESELDSQEKKMRERLKKILDSSAKNKDAVENLNTELRVMKEKHNESKRKYDYLKIRIGEVEKDLRELKADRHENERDAKLSQAVATLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKPIMERLRTLGGTAKLNLFQAFELNYCKFDPPLEKAILFAVGNTLVCEDLEKAKLLSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKFDAYVKKKEQYEAELKELGSIRDMHLKESDTEGKKSGLEKKIQYAEIEKRSIEDKLSNFSLEKGTIKEEIKRISPELKKLGDAVEKRNRELITLEKRINEITDRIYRDFSKSVGVANIREYEENRLKDAQNVAEERLKLSSQLSKLKYQLEYEQNRDMSSRIEELKSSISALENDLNRVQDKEAEAKLAAEKATEAINQLKDEAKEWKSKSEDCEKEIQEWKKKASAATTNISKLNRQINLKEAQIEQILSQKKEISEKCELEQISLPTISDPMDTDISTPPPVYDFDKLSKPLKERKPSGRDKIEVDFKQKMDALISEIERTAPNLKALDQYEALLEKERAVTEEFEAIRKEEKEKADRFNVVKQKRYDMFMDAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARVNQDADGGNGFQSIVISLKDSFYDKAEALVGVYRDSGRGCSSTLTFDLSKYQES* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0970 1223 Gene3D - 599 665 - -
Psa6g0970 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 870 1206 IPR027417 -
Psa6g0970 1223 SMART SMC_hinge_2 517 639 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Psa6g0970 1223 Coils Coil 835 939 - -
Psa6g0970 1223 Gene3D - 964 1222 IPR027417 -
Psa6g0970 1223 Gene3D - 8 234 IPR027417 -
Psa6g0970 1223 Gene3D - 480 594 - -
Psa6g0970 1223 SUPERFAMILY Smc hinge domain 481 687 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Psa6g0970 1223 Coils Coil 1013 1033 - -
Psa6g0970 1223 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Psa6g0970 1223 Pfam SMC proteins Flexible Hinge Domain 517 636 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Psa6g0970 1223 Coils Coil 307 327 - -
Psa6g0970 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 1165 IPR027417 -
Psa6g0970 1223 Pfam RecF/RecN/SMC N terminal domain 10 1204 IPR003395 -
Psa6g0970 1223 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1222 - -
Psa6g0970 1223 Coils Coil 170 231 - -
Psa6g0970 1223 Coils Coil 715 735 - -
Psa6g0970 1223 CDD ABC_SMC1_euk 1102 1217 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Psa6g0970 1223 Coils Coil 454 502 - -
Psa6g0970 1223 Coils Coil 412 439 - -
Psa6g0970 1223 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1222 - -
Psa6g0970 1223 Coils Coil 335 362 - -
Psa6g0970 1223 Coils Coil 384 404 - -
Psa6g0970 1223 PIRSF SMC 8 1221 IPR024704 GO:0005524|GO:0016887
Psa6g0970 1223 Coils Coil 251 285 - -
Psa6g0970 1223 Coils Coil 757 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0970 Psa-Chr6 37148516 37166131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0970 8 114 Structural Maintenance of Chromosomes family AT5G61460 32.456 3.62e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0970 K06636 - gmx:100791953 1882.46