Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0948 ATGTCTCACAATCGCATCACCACCGATTCTCCTCTCTCTCGTCGCATAGTTCGTTCTTTCCTCCATTTCCTCAACCATGTTGAACCTAGCCCCGGGGTTGATGCTGAAGGAATTGAGGTTGCTAGGGAGTGTTTAGTAGAGGCTTTTAAGATTAATTCTTCTTCTGTAAGTGACGAACCTGATTCGTTGATTGATATATTCAAGTCCTTTGATGCAAACAAGCAATGTGAAGTTAGTAGGGAAGATTCTCTGAAAGCTTCAAGTTCACTCTCTGGTCAGAATGCTGTTGATGCTAAAACTCATCCCCAGGCATCGATATCCATGGATGAAGATTTGGCCGAGGACCCTGACATTTCCGTGTCTAAAGATGAACTCTGTGGACAATTCTTTGCTGCTCTGGAGAAAAAGCGCTATTTCAGGACCAATAGTGATGGAGGTGATGACATAGTGCAATTGGAGAAAGCATCTCGCTTATTTGATGATGGTTTTACGGAGATGGAAAAATCTGGGTATCTGCAGTTTAATATGAAGAATTTGGCTGAGTCACTAAAAGCACTAGGTAACAAGGAAATGCAATCCAAGCAATACAATGATGCAGTTGAGTTGTATAATTGTGCAATTGCGATAAATGAAAAGAATGCTGTTTACTACTGCAACAGGGCAGCTGCTTATACTCAAATTAACAAATATACCGAGGCAATTGAAGATTGTCTTAAGTCTATCGAGATTGATCCGTACTACAGTAAGGCATACAGTCGTCTGGGATTAGCTTATTATGCACAAGGAAAATACAGAGATGCTATTGATAAAGGGTTTCAAAAAGCCTTGCAATTGGATCCTAATAATGAGACTGTTAAGGAAAATCTAAGGGTAGCTGCACATAAGTTGATGGAAGAGCAACATCATGCAGGTCACAATCAGAATTCGGGATCGTCTCAAGAATTCCAAAACCATTCTGCAAGGGGTTCAACAAGCCATGCAGCTCCACCTCCATTTGCCTCAATGCAATTTAACCCCGGCAATCTGGCTAGCATGTTCATGTCGGCCACAAATGCGCATCAGGGCTCACATTCTCAGGAAAGTCAAGAAGATGCCAATAGTAGTGGAGCTAATGAACCCGGAATTCAATTTGGGGGCAATGTTAATGTAAACCCTGATCAAATCTCTCAGGATCTAAGAGGCGCCTTTCAATCTGTGATGGGGATGTTCTCAGGGAATGTGCCTCCTGGGCAACCACGTGATCAAATGAATGGAAGTCAAGAAAATGCCAATAGTGGCGAAGCTAACGAACCAGAAATTCAATTTGGGGGACGTGTTGATTTAAACTCTGATCAACTCCCTCAGGAACTAAGAGTCTTTCAAAATGTGATGGATATGTTATCAGGGAATGTACCTCCTGGGCAACCACATGATCAAATGAATGAAAGAACAGCACCAAACTAA 1443 0.4207 MSHNRITTDSPLSRRIVRSFLHFLNHVEPSPGVDAEGIEVARECLVEAFKINSSSVSDEPDSLIDIFKSFDANKQCEVSREDSLKASSSLSGQNAVDAKTHPQASISMDEDLAEDPDISVSKDELCGQFFAALEKKRYFRTNSDGGDDIVQLEKASRLFDDGFTEMEKSGYLQFNMKNLAESLKALGNKEMQSKQYNDAVELYNCAIAINEKNAVYYCNRAAAYTQINKYTEAIEDCLKSIEIDPYYSKAYSRLGLAYYAQGKYRDAIDKGFQKALQLDPNNETVKENLRVAAHKLMEEQHHAGHNQNSGSSQEFQNHSARGSTSHAAPPPFASMQFNPGNLASMFMSATNAHQGSHSQESQEDANSSGANEPGIQFGGNVNVNPDQISQDLRGAFQSVMGMFSGNVPPGQPRDQMNGSQENANSGEANEPEIQFGGRVDLNSDQLPQELRVFQNVMDMLSGNVPPGQPHDQMNERTAPN* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0948 480 Gene3D Tetratricopeptide repeat domain 174 331 IPR011990 GO:0005515
Psa6g0948 480 MobiDBLite consensus disorder prediction 84 105 - -
Psa6g0948 480 PANTHER LD24721P 9 421 - -
Psa6g0948 480 Pfam Tetratricopeptide repeat 214 246 IPR001440 GO:0005515
Psa6g0948 480 Pfam Tetratricopeptide repeat 249 282 IPR013105 -
Psa6g0948 480 ProSiteProfiles TPR repeat profile. 248 282 IPR019734 GO:0005515
Psa6g0948 480 MobiDBLite consensus disorder prediction 460 480 - -
Psa6g0948 480 SUPERFAMILY TPR-like 178 298 IPR011990 GO:0005515
Psa6g0948 480 MobiDBLite consensus disorder prediction 350 370 - -
Psa6g0948 480 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Psa6g0948 480 MobiDBLite consensus disorder prediction 302 327 - -
Psa6g0948 480 PANTHER LD24721P 9 421 - -
Psa6g0948 480 MobiDBLite consensus disorder prediction 84 101 - -
Psa6g0948 480 SMART tpr_5 214 247 IPR019734 GO:0005515
Psa6g0948 480 SMART tpr_5 180 213 IPR019734 GO:0005515
Psa6g0948 480 SMART tpr_5 248 282 IPR019734 GO:0005515
Psa6g0948 480 MobiDBLite consensus disorder prediction 303 324 - -
Psa6g0948 480 Gene3D Immunoglobulin FC, subunit C 3 73 - -
Psa6g0948 480 ProSiteProfiles TPR repeat profile. 214 247 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0948 Psa-Chr6 36357824 36369673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0948 179 278 U-box Gene Family AT3G07370 32.000 4.36e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0948 K16365 - gmx:100799770 568.54