Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0945 ATGGATCAACACTTCCTCCACCACTACAACCACCACCAAGAACACCGTTCAAGATACGCTCCTCCAGCTTCTCAATCGCACTACCATCTCCCTCCACCACCTGCTCTTCCACCTCCTCCACCTCTCTCTTACCGCACTATCGACACCCTTCCTCCTCCACCTCCGCCTCCATCTTACAACCCTTCTTTACCTCACCATTCTCCTCGATTCCCTTTTTACCCCATCGAAGAACAACGCACTCTCTCAAACTCATTCACCAATCGTAACGACCATATCCCCCGCCGTATCGTCCCTGAACCCCCTTGGAACCCTAACCCCGAAGACCGCTCCACCAGAAATCATCCTCCCGTCGATTTCCATCGCGATTCGCACCACCACAACCACAACCACCGTACTCCGCCTTCATATCCACCTATCCGTTACGAATCTGAGAGCTCTTACGGGAGGTTAAACTCAGAAACCTCCCGCCTAGTAGGAAGCCCTAGGGAAGCCTTCGTCTACGGCAGAACCACCAACGAGGATAGCTACCACCGCCGCGCAACTGCCACGTCCACCTCAACATCCAATATCGCCTATCACCCAATCAATGACGAGTCCCCCAGAACGGAAAACAGAAGGTGGTTGAATGATAGAAAAGTACACAATTCTTCTCCTTCACATTCTCCTTCTTTTGAATTGGTGAATGATGAAATTGGTACTTCTGTGAAACGAGAGTATCATGGTTCTGATACGGTTAGGTATAGTAATGGTAGCAATAGTGGTAGATCGAATAGTAGAGAGTGTAATCATGGTCGTGAATTCAGTCGTACTCCACCTAAGAAACAGATTCAAAAGAAGAGTGCTCTTCTTAGAATCCAGACGGTAAAACCAAACCATAGGAATCGTGACATTGAACAGTTGCGTTATGTTTCTGATTCTAACAATAACTTCTTCAGGGGTAACAATAAAGATCAACATGGAGGTTACACAAAGGGTGAAGATAGGAAAAAAGGAAGCCCGGTTGAACTTGACATTTCTTTTGAATCTAACTCTCTTGTGGCCAAGGCTATTGTCACCGCCCCACCATCCACTTCTGGTGCCACTGCTGCTCCTGTTTCTGGTAAACTTAAACTGTCTTCTGTTGTTGAAAATTTGAATGATAATAATAATACTTCGCAGAAGAATGTAGGTGATGCTTGTAATCCTCATGACAAACATGGGATGGCAGTTTCTGTTAAAGGTATTGGCACTTGTACTCGGAAATTGGCCTCTAAGGTTGTCAAGAAGAAGAAAATTGTTAAAAGAGTGGTGAAGAAAGGTTCTGTAAATCCTACTAGTTCAAGCGTGCTGGCTTCACCTTCTCTCGCCAAAGCAGTTGGTGGAACTGTGCAGGCAGATAGTGTAACACACAGCTCGTCCAATGCTGCCTCTGAAAATGTTAAAACTGAAACTTGTTTGGAGGAGAAAGTCATTGCTGTTGATAAGGTATCTGCACCAAACAATGAAAAGACTGTATTGTGTGAAGATGAAAGTCGGGGTTTGTCCCTGCTGAGTTCGGGGCCAGAATGCAGATCACAAGAATGTAAGATCAATGAAGATTCTGATTTTGGGAAAGAATCCAGGTTTGAAAGAGGTGGAAGTATTTCAAGTGCTCCATCTTGTGCTTCTAGTAGTGTAGATAAAAATTGTGGTTCTGATAGTGATTGTTTAGATGTGTGTAATTCTGTCCATGATTTGCTTAGCGTGACAAAAATTGACAAACCTACTAAGTCATTAAATGGAAGTACTTCTGAACTCCATCACTTGGATTGTGGGAACAAGCAAACATGTCAGAGTGAAGTATCTCTATCACCTGGGAAGTATATAGATGTAGGATGTTCAGAGAATAGGAATCTTGTAGATGCAGGGAATGAATTGAATTCCAATGTCCTTTCAGCTGATATTATAAATACACATAATTCTGCTGATGACAGCGTTTACGGCTTCAATTCCAATGATCTTACAAGTTCAGAAGAGAAAATTACTGTCAATGACAGTGAGAATAATGACATTGATGCAGGGGCTTATTGTGTAAAGATGGGTCTTGCGATCACTACATTGGAACAAAATTCAGATACAGCTATCCCTCTGCCATGCAGTGGAATGGTTGCCTCTTTAAGTTTAGGAGATATTAGGATTCAGGATGGTCAAGATTGCCTACAACATACCAGTGTACTGAAGAAGGGTTCTGATGATGGATCATCTAGTTTAGAAGAGAGTATCGTTGTTCACCAATTTGGTATAATTAAAGATGCTGAAAAGCAAGTGTCCCCTGGTGAAGTCCCCATATATGCTGAGAATTGCGACATAGATAAAACATTTCCAAATTCTAATATTTCACTTGGATTTGAAGTAAGGGATACAAGTAAGATAGAAAAGAGAAATGTTAGGACTCGTTTAAATTTTTTGAGTTTGGATTTGGAAGATATATCTCTGACTCCAGTTAGCCATTCAAATGATGCTGATAGAGGCTCAAGAATTTTATTGAAGGATCCATGTCCTTCAGAAGTCCTAGATCATTCTATTCAAAGTCTAGATTTTTACTCACTGTCCAACCAGGTTAGGGGCATTGCTTTACAAGGGAAAAGGGCTTTTTCAGAGACTGAATTTTGTGTTGCAAATAATGCTAGTGATGATGAAAATAAGGTTTCAACAGTTTCTAAGAGGAAAAAAGTCACTGCTAGTAACCCAAATTTAACTCAATTTCAAACTGAATTTATTGATTCAATTGTAGCTACTACATCTAGTGCAGAAGTTCCTATCGGTTTCAGTGATAGCCATGAACATAAGAAAGACGTTGTTCCATTGTCAAGCATGGGTATGGATATTCAGTATAATGCTCAGTCAATGCCTTATTCAGGTAATATTGCTAAATTGTCTGAATGTAATTTCACTGGAGGATCATTTGAGCCTATGAATGCAAATGGGGAAACCAAGAGTTCTGAGCATTTGGAGTTGCAGCACTCAGATATTGTCTCTACACAATGTGCGGACTTGGCAATTCCAAATGTTCAGTTTTCAGTGTTAGGGTGTGAGCAGAAAGATAATGTTACTCCAGTTGTGCCTATAACTAATAGTCAAACTACTGACATTTCGGTTATTGGGATTATCAAGGGAGATAATACAGATTCACAGGATGCCGAAAACAGTTACCATTATAGAGATGATGTGCAAAGGTCTCCAAGGGCTGATATGTTATCGAATGATTTCAATATGAAGAATGATTCACTTGCTCAGGAGAACCTAATGTCCTGTCCTGTCGCTGGGGATGGATTTACCATCAGTAATTCAAATAATGAATTGATTGAGGATTTGCCCAATGCTTTATCTGATATATATTCTCATGGGATGACATCTGAATTACCGGATAGAATAATTACTGAATTTACAGCAATCGATGATGATGAAAACATTTGCGAGGGTGAAGAAAATCCAAAAACTGAATCTATTGTCAAACATGGTTCTGACTCAGATACTTCTACTTCATTAAAACAGCATAGTGAAAAAACTATGAAGTTAGATTACGTAATTGGATGCAGTGACCCAATTACAAGGAATATAACGCCAGAACCAACCCAAGTTTGTTCCAAAGTTACACCCCTGGGCCTAAATCCATCTTGTTCTGAATTAAATGGAAGCAAAACTCAGCCTGATGGTGTCATCCTTAAAGCGTCTCAGGATTATTCTTTTGCCTTTCCGAAGCCAAAAACAAAGACTCCTGCCTCTTCAATGCATGCTTTAAAATCCCGTACTTGGCATCGGACTGATAATAATAATCCTCCCGCTTCTCTACCTAGAGTCAAGTTTTCAGCAAGAATAGTTCCTCCCAGAAACCCAATTCTCGAAAGGAAAAAGAACTTTCAAAATACTTCTTACATTCGTAAGGGTAACAGTCTTGTTAGGAATCCTACTCCAGTTTCTGCTATACCTCAAATCTCCTCTACCAGTCTCATGAGGAAATCTACTCCGGTTTCTGCGATACCTCAAATCTCCTCTGCAAATCTGCTACCTTTGGGCTTAGGTGAAATACCGAAGGGCACCAAACCTGAAAGCAGGGCTGATTTGACAGATTCGTCAATCTATTCAAAAATGAAAGCATCTAATAGTGCTCTACCCATTGACACCAAATCAGAGGAAAAGATATCTTTTCGGTCGCTAGAACCCTCTTCCAGTGGTTGCTGTGAAAACACAACTGATCTTAGGAAGTTTATTGAAAGTAATGATGCACCAGTCTCCTCTGGAGATGTACCAAAACAATTTGAAGCTCTTGAAAAACAAACTGATCCATTTAGCAATGGGGGGTGTCAAGCTGAAGCAAATGATGGAAATATTTCTTCTTTGAACTCAAAAAGAATAGTTTATGTAAAGCCTAAAACAAATCAATTGGTTGCTACTTCGAGTTCTAGTGATATGATTGTCTCTACTGATGACAAAGGCCAAACAGCCTTCTCTGATAGCTATTTCAAAAGGAGAAAAAATCAATTGGTTAGAAATACGTTTGAAAACCACACAGTTGCAATGCCCAATAACATTGGGAATTCTGACGTTCAAGGAGCTACTAGAGTACTTTGCAACCGGAGGTTTACCAAGAGGCGGTCACATAAAGTTGCTGGGTTGTCAAGTAAATCTTCAAGAGCCTCATTGGTGTGGACACTTAGTAGCAAAAATTCTTCTAGAAATGATAGGAACTCGTGGCATTATCAAAAGTTTCCATGGAAAAGAACAACATATTTAAGAAGCTTCATTCATAATTCAGCTTCAAGTTTCAATAGTGGTTCCTTATCTGCAGCCGGCAAGAAATTGCTTCTGTTGAGAAAGAGGGACACTGTATACACCAGGTCGACCCGTGGGTTTTCTCTTTGGAAATCCAAAGTTTTAGGCGTTGGAGGGTCTAGTTTAAAATGGTCAAAATCTATTGAGAAGCACTCAAAGAAAGCTAATGAGGAAGCTACACTTGCTGTTGCTGCTGTTGAGAGGAAGAAGAGAGAAAAGACAAATCCAGCTCGTACTGGTTCTCAAACAAAGAGAGAACGTATTTTTCGTGTTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGCGGACACTTCAGAGGATTTCAGATGATGAGTCCCTGTCCTCTGCCTCAACCAGTTCAGGTTTGGTTTCTAAAAGAGGTTACATCCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCACAATTGGCAATGGAAACCAACTTATAAGAGACCCAAAGAAACGAATTCGAAAACTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGTAAGCAGAAGTACTGCCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGGAGGGAAGTGTCCTTACATTCACGATCCCTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCAAACTGCAAATTGACTCATAAGGTTCTTCCAGAGAGAATGCCCGATTGCTCATACTTCTTGCAAGGCTTATGCTCAAACAAAAGTTGTTCATATAGACATGTCAACGTGAACCCTAATGCATCTATTTGTGAAGGATTTCTTAAGGGTTACTGTGCTAACGGGAATGAGTGCCGGAAGAAGCACAGCTACGTCTGTCCTAGTTTTGAAGCAACAGGAACCTGTACTCAAGGAACCAAATGCAAGCTTCACCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCCGGAGATCAGAACAACGATAATGGACGTTACTTTGGTTCTATTCCTGCGGATGTTTCTGAACCTGGGTTGACGGTTGCTTCCAGCCATTCTCAACAGAATGAAGAACATGAAAATGAACTAACCGACTACATCAGTCTTGATGTATATGAAGAAGCAGAAGACATGGTTGACCAATCATTTGAGCTATCAACATTTTGTGACACTGATGCCATGGACACTTCTGATGAACTCATCAAATCTATTTCTATAATACCGAAATTTGCTTTGCAATCTCAGTCTAGAAGCCCGCAAGCTTAG 6048 0.4079 MDQHFLHHYNHHQEHRSRYAPPASQSHYHLPPPPALPPPPPLSYRTIDTLPPPPPPPSYNPSLPHHSPRFPFYPIEEQRTLSNSFTNRNDHIPRRIVPEPPWNPNPEDRSTRNHPPVDFHRDSHHHNHNHRTPPSYPPIRYESESSYGRLNSETSRLVGSPREAFVYGRTTNEDSYHRRATATSTSTSNIAYHPINDESPRTENRRWLNDRKVHNSSPSHSPSFELVNDEIGTSVKREYHGSDTVRYSNGSNSGRSNSRECNHGREFSRTPPKKQIQKKSALLRIQTVKPNHRNRDIEQLRYVSDSNNNFFRGNNKDQHGGYTKGEDRKKGSPVELDISFESNSLVAKAIVTAPPSTSGATAAPVSGKLKLSSVVENLNDNNNTSQKNVGDACNPHDKHGMAVSVKGIGTCTRKLASKVVKKKKIVKRVVKKGSVNPTSSSVLASPSLAKAVGGTVQADSVTHSSSNAASENVKTETCLEEKVIAVDKVSAPNNEKTVLCEDESRGLSLLSSGPECRSQECKINEDSDFGKESRFERGGSISSAPSCASSSVDKNCGSDSDCLDVCNSVHDLLSVTKIDKPTKSLNGSTSELHHLDCGNKQTCQSEVSLSPGKYIDVGCSENRNLVDAGNELNSNVLSADIINTHNSADDSVYGFNSNDLTSSEEKITVNDSENNDIDAGAYCVKMGLAITTLEQNSDTAIPLPCSGMVASLSLGDIRIQDGQDCLQHTSVLKKGSDDGSSSLEESIVVHQFGIIKDAEKQVSPGEVPIYAENCDIDKTFPNSNISLGFEVRDTSKIEKRNVRTRLNFLSLDLEDISLTPVSHSNDADRGSRILLKDPCPSEVLDHSIQSLDFYSLSNQVRGIALQGKRAFSETEFCVANNASDDENKVSTVSKRKKVTASNPNLTQFQTEFIDSIVATTSSAEVPIGFSDSHEHKKDVVPLSSMGMDIQYNAQSMPYSGNIAKLSECNFTGGSFEPMNANGETKSSEHLELQHSDIVSTQCADLAIPNVQFSVLGCEQKDNVTPVVPITNSQTTDISVIGIIKGDNTDSQDAENSYHYRDDVQRSPRADMLSNDFNMKNDSLAQENLMSCPVAGDGFTISNSNNELIEDLPNALSDIYSHGMTSELPDRIITEFTAIDDDENICEGEENPKTESIVKHGSDSDTSTSLKQHSEKTMKLDYVIGCSDPITRNITPEPTQVCSKVTPLGLNPSCSELNGSKTQPDGVILKASQDYSFAFPKPKTKTPASSMHALKSRTWHRTDNNNPPASLPRVKFSARIVPPRNPILERKKNFQNTSYIRKGNSLVRNPTPVSAIPQISSTSLMRKSTPVSAIPQISSANLLPLGLGEIPKGTKPESRADLTDSSIYSKMKASNSALPIDTKSEEKISFRSLEPSSSGCCENTTDLRKFIESNDAPVSSGDVPKQFEALEKQTDPFSNGGCQAEANDGNISSLNSKRIVYVKPKTNQLVATSSSSDMIVSTDDKGQTAFSDSYFKRRKNQLVRNTFENHTVAMPNNIGNSDVQGATRVLCNRRFTKRRSHKVAGLSSKSSRASLVWTLSSKNSSRNDRNSWHYQKFPWKRTTYLRSFIHNSASSFNSGSLSAAGKKLLLLRKRDTVYTRSTRGFSLWKSKVLGVGGSSLKWSKSIEKHSKKANEEATLAVAAVERKKREKTNPARTGSQTKRERIFRVGSVRYRMDPSRRTLQRISDDESLSSASTSSGLVSKRGYIPRRLVIGNDEYVTIGNGNQLIRDPKKRIRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVLPERMPDCSYFLQGLCSNKSCSYRHVNVNPNASICEGFLKGYCANGNECRKKHSYVCPSFEATGTCTQGTKCKLHHPKKQSKGKKRKRSGDQNNDNGRYFGSIPADVSEPGLTVASSHSQQNEEHENELTDYISLDVYEEAEDMVDQSFELSTFCDTDAMDTSDELIKSISIIPKFALQSQSRSPQA* 2016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0945 2015 ProSiteProfiles Zinc finger C3H1-type profile. 1885 1907 IPR000571 GO:0046872
Psa6g0945 2015 MobiDBLite consensus disorder prediction 9 28 - -
Psa6g0945 2015 ProSiteProfiles Zinc finger C3H1-type profile. 1830 1856 IPR000571 GO:0046872
Psa6g0945 2015 MobiDBLite consensus disorder prediction 144 163 - -
Psa6g0945 2015 Gene3D - 1802 1857 - -
Psa6g0945 2015 ProSiteProfiles Zinc finger C3H1-type profile. 1857 1884 IPR000571 GO:0046872
Psa6g0945 2015 MobiDBLite consensus disorder prediction 259 273 - -
Psa6g0945 2015 Gene3D - 1858 1920 - -
Psa6g0945 2015 MobiDBLite consensus disorder prediction 119 138 - -
Psa6g0945 2015 MobiDBLite consensus disorder prediction 170 203 - -
Psa6g0945 2015 MobiDBLite consensus disorder prediction 310 330 - -
Psa6g0945 2015 MobiDBLite consensus disorder prediction 177 195 - -
Psa6g0945 2015 SMART c3hfinal6 1804 1828 IPR000571 GO:0046872
Psa6g0945 2015 SMART c3hfinal6 1775 1803 IPR000571 GO:0046872
Psa6g0945 2015 SMART c3hfinal6 1884 1906 IPR000571 GO:0046872
Psa6g0945 2015 SMART c3hfinal6 1830 1855 IPR000571 GO:0046872
Psa6g0945 2015 SMART c3hfinal6 1857 1883 IPR000571 GO:0046872
Psa6g0945 2015 MobiDBLite consensus disorder prediction 1905 1924 - -
Psa6g0945 2015 MobiDBLite consensus disorder prediction 244 258 - -
Psa6g0945 2015 PANTHER CCCH ZINGC FINGER 328 2000 - -
Psa6g0945 2015 MobiDBLite consensus disorder prediction 85 111 - -
Psa6g0945 2015 ProSiteProfiles Zinc finger C3H1-type profile. 1775 1804 IPR000571 GO:0046872
Psa6g0945 2015 MobiDBLite consensus disorder prediction 237 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0945 Psa-Chr6 36259800 36269607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0945 1781 1910 C2H2 Transcription Factor Family AT2G32930 31.618 9.32e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa6g0945 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0945 - - mtr:MTR_1g029710 2593.15