Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0936 ATGTCGAAATCAAAGTCATTTCAAGGCGTAAACGTGTTCATGTCGCGAAACCTAGTTCCGCCGGAAGTATTCGACACGCTTCACGACGCCGTTAAAAATAACGGCGCTCAAATTCACCTTTGCTGCGATCCTTCCCGTAATGGCCCCAACGATTATCACATTATTTCTTGCAGTAAACACGAGAAATTTGAAGATCTTAAATCCAAAGGCTGTAAAATGCTAGGTCCTAGATGTGTTCTTTTTTGTGCTAAAGAACGAAGGCCTCTTCCTAAACAAAGTTTCACCTGCTGCTTTACTATGGATGGTGTCAAAATACTTGCCTCTGGCTTTGATGCGGATGAGAAGGTTAAAATAGAAGAATTAGTGACTGAAATGGGGGGAGCTCTTCAGACTAAACCGTCCTCAGATTTGAACTTTGTCATCGTGAAAAATGTTTTGGCTCTAAAGTACAAGTGGGCTTTGAATATCCTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGATGAGCATCGCGTTGTTCCTCAAGAGTCATATAAGGTTCTTCCTTTCTCGGGGTTAAAGATCTGCGTGACTGGAATCCCAGCAGATAAGCGGAAAGAGATGGAAACGCTTACTCTACAAAATGGTGGAAAATACTCTGCAGAATTGACAAAGAAGTGCACACATTTGATTTCTGATGCTCCCGAGGGTGATAAGTATAAGGTGGCAAAACGTTGGGGCCACATTCATATTGTGACAATGAAATGGTTTGATCAATCTGTTGCTCGAAGAGCATGTCTGAATGAGGAGTCCTACCCTGTTCAGAATGGATCTTTATCTTCACGTAAGGTGACTAGGGACTTAACAGTGAAACATAGCCAGGATAGGGATATTGGGAAAATGCAATCTGGATCATCCTCAAGAGCTGCAGATTCAAATATGCTAGTTTCTGATTGTGCTGAGTCTATGGATGTAGATCTAGAAGCTACACAGTCAGAACATATGTCGTCTTTTTCAAATGTTCCATTATTTGTTAAAGAGGCAGACGCTGAAGCACCTCCATTGCAGACTAGCGATGAATTGAACTTGGACGGTGCTGTTGCCAATGATTCTGAATCTGATGACAATGACCTATACTTAGCAGAATGTAGAATATTACTTGCTGGTTTTGAAGCTTCTGAAATGCGGAAGCTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGATACATGTATTTTAATGATAAGTTGACACACATAGTAATTGGGAATCCTACAGAAATAGAAAAGAAGGAAGTAAGAAGTATTGCTGCTCTTGGTGTTGTTTATGTTGTTAAAACCTCATGGCTTGAAGACTGTGACCGTGTAAAGAAACAAGTCCCTGTTCTTCGACGACACATTGCATGTGATCTTTTTCTTCCAAAAGCCAACTCAGTAAAAGGAGCGGTTACTGGCATTATGCCTATGGATCAAAGTAAAAGCTCAAGCATTCGCCAAAGCTTTCAAACTAATCAGGTGGCGGGTATTAAGGACTTTGGAGTTACGATACCAGAGTCTTTGGATAAAAACAAACAAGAGAAACACAGTACGGGTATGAATGTTGTCACATTCGGTAAAGCATCAGATAGAACTATGCCACAAACTCAACATCCTGATAAAAAATTGAGGGTACAAAAGAGCACGCAACATGACACCAATGTACATGTGAAGTCAATAAATGTTTTCAAAGGGAAAACATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGCTGAGATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGCTAATAAGTGGGCAAACAAAACAGATTATTCACTATATTATTGAATGCCACGGTGTAAAACCCAGGTCAATAGGTGATTATGGAAGTACATATATTTCCAGTCACTGGATACGATCTTGTTTGGAGAATGGATCCTTGCTGGATGTGGACAGTCATATTATTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGTTTTGAAAGCCTCCGGTTTTGTGTTTCACAATATGAGGAGAAAGACAGAATTCTACTTTGGAACTTGTGTAAAGCTCTAGGAGCTACATTTGCAGATAAGTTGAGTAAGAAGGTCACCCATTTGTTGTGTAAATTCACCAATGGGCCCAAGTACGAGGCTTCTTGTAAGTGGGGGATCCGATCAGTTACATCTGAGTGGATATTTGAATGTGTCAAACAGAATGGAGTTATTGCCATTGATCAATTTTTGCCCAAAGAAGTCACTAGTCAAGACCGAGAGGCAGGAGTTTGCACAGTGAGTCAATTTCCTACCCAAGCTGTTCGAATGATAAATGACATGCCGTCCCAGTTTCCAAGTCAATCACAAAGTTTGAGAAGCACGACAAATAAAAATGTAAATACGGGAGTTGACAATCATAGGACTCGTTCTAAAACATCAAGCGTTAATAGCAAAAAGGCAAGGCTCGTGGAAGAACCTGACCAGTATAATAGGGTGCCTTCTGCAGTAAATTCAGGCAGTCATGTCTCTGACTTGAATTTTTCTGAAGACAATAAGCTCAAAGATGCTCGGGAGGTAACCCATGCTGGTCCTGATGTTGCTACTGCTATAGAGGACTTGTTAGAGCAGACAAGCAAGATGCATGATCAGAGGTCCCCAGGGAATACAGGGTGCGAGAGAAGTATTTACTCATCTGATTGTTCAGCCATTGGCCAAGACAATCCAAATCCTCACACTGTCTATGGATTATCAAATCACTGGTTAAACAGAAATGGAAGAAACGGAGATAATGGTGAGACTCCTCAAGACCGAAAAGCTGGAATGTATGATGGTTTTAGTGAAACACAAACAGAATCTCAGGTTGTTAGTTATGAAGAAGACTTGTCTGGAAGGCAAATGCTTATAGATAGAGTTCTAACTCGAAGTAGCATGCAGTGA 2937 0.4089 MSKSKSFQGVNVFMSRNLVPPEVFDTLHDAVKNNGAQIHLCCDPSRNGPNDYHIISCSKHEKFEDLKSKGCKMLGPRCVLFCAKERRPLPKQSFTCCFTMDGVKILASGFDADEKVKIEELVTEMGGALQTKPSSDLNFVIVKNVLALKYKWALNILKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPADKRKEMETLTLQNGGKYSAELTKKCTHLISDAPEGDKYKVAKRWGHIHIVTMKWFDQSVARRACLNEESYPVQNGSLSSRKVTRDLTVKHSQDRDIGKMQSGSSSRAADSNMLVSDCAESMDVDLEATQSEHMSSFSNVPLFVKEADAEAPPLQTSDELNLDGAVANDSESDDNDLYLAECRILLAGFEASEMRKLVNMVRKGGGSRYMYFNDKLTHIVIGNPTEIEKKEVRSIAALGVVYVVKTSWLEDCDRVKKQVPVLRRHIACDLFLPKANSVKGAVTGIMPMDQSKSSSIRQSFQTNQVAGIKDFGVTIPESLDKNKQEKHSTGMNVVTFGKASDRTMPQTQHPDKKLRVQKSTQHDTNVHVKSINVFKGKTFCFSNLFPEERRAEIVQWISQGGGELISGQTKQIIHYIIECHGVKPRSIGDYGSTYISSHWIRSCLENGSLLDVDSHIIYSPLPCRVPLPGFESLRFCVSQYEEKDRILLWNLCKALGATFADKLSKKVTHLLCKFTNGPKYEASCKWGIRSVTSEWIFECVKQNGVIAIDQFLPKEVTSQDREAGVCTVSQFPTQAVRMINDMPSQFPSQSQSLRSTTNKNVNTGVDNHRTRSKTSSVNSKKARLVEEPDQYNRVPSAVNSGSHVSDLNFSEDNKLKDAREVTHAGPDVATAIEDLLEQTSKMHDQRSPGNTGCERSIYSSDCSAIGQDNPNPHTVYGLSNHWLNRNGRNGDNGETPQDRKAGMYDGFSETQTESQVVSYEEDLSGRQMLIDRVLTRSSMQ* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0936 978 Gene3D BRCT domain 186 272 IPR036420 -
Psa6g0936 978 CDD BRCT_TopBP1_rpt2_like 666 741 - -
Psa6g0936 978 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Psa6g0936 978 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Psa6g0936 978 SUPERFAMILY BRCT domain 186 272 IPR036420 -
Psa6g0936 978 SUPERFAMILY BRCT domain 664 752 IPR036420 -
Psa6g0936 978 CDD BRCT 103 170 - -
Psa6g0936 978 SUPERFAMILY BRCT domain 373 458 IPR036420 -
Psa6g0936 978 MobiDBLite consensus disorder prediction 280 309 - -
Psa6g0936 978 Pfam BRCA1 C Terminus (BRCT) domain 101 170 IPR001357 -
Psa6g0936 978 ProSiteProfiles BRCT domain profile. 668 751 IPR001357 -
Psa6g0936 978 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 965 - -
Psa6g0936 978 ProSiteProfiles BRCT domain profile. 567 655 IPR001357 -
Psa6g0936 978 Gene3D BRCT domain 565 661 IPR036420 -
Psa6g0936 978 Pfam twin BRCT domain 190 253 IPR001357 -
Psa6g0936 978 Pfam twin BRCT domain 671 733 IPR001357 -
Psa6g0936 978 Gene3D BRCT domain 361 461 IPR036420 -
Psa6g0936 978 Gene3D BRCT domain 98 185 IPR036420 -
Psa6g0936 978 Gene3D BRCT domain 663 756 IPR036420 -
Psa6g0936 978 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Psa6g0936 978 SMART BRCT_7 184 261 IPR001357 -
Psa6g0936 978 SMART BRCT_7 569 645 IPR001357 -
Psa6g0936 978 SMART BRCT_7 374 454 IPR001357 -
Psa6g0936 978 SMART BRCT_7 4 86 IPR001357 -
Psa6g0936 978 SMART BRCT_7 665 741 IPR001357 -
Psa6g0936 978 SMART BRCT_7 97 174 IPR001357 -
Psa6g0936 978 SUPERFAMILY BRCT domain 570 657 IPR036420 -
Psa6g0936 978 Pfam BRCT domain, a BRCA1 C-terminus domain 569 652 IPR001357 -
Psa6g0936 978 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Psa6g0936 978 Gene3D BRCT domain 33 94 IPR036420 -
Psa6g0936 978 SUPERFAMILY BRCT domain 59 183 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0936 Psa-Chr6 35422263 35434040 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0936 1 977 Core DNA Replication Machinery Family AT1G77320 49.079 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0936 K10728 - gmx:100804966 1429.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0936 6 35422263 35434040 Psa6g0936 6 35422263 35434040 ECH