Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0934 ATGATCATCATGTTGGGCATATTTGTATTATTTCTATTGCAGTTCAAAACAAAATTTGCAACGGTCATAGGGTTCAGCCTTTTAATGTCTGGTTTGTTGGCATTGCAATATTTTATGAAACATCAGGACCTGTCTGCCGCATACAATAAGGATGCCACCTTTTCAGTTCAAGTTTTTTATGCCACTCTGACATTTACTACTGTTACAGTTGTATTGGTTTTGCCTTGGATTATGCCTATGAAAACTCGTGAAATGTGCTCACAATGGAACCTCTACATGTCTGCTTCTGTTCCTGCGGAAGTCCATAATATGACACCAATATTTGTTTTAAAAGATTCTTTGCATGTTATGGGCTGTGTGTACATAACATCATGGTGTCTGCTGCAATTGTTGCTTCAACGACCAATTAATGCAATGCCTTTGTTGTTGCTCAATGTTCAAATCTTGGCTTACATGCTTGCCTTTTCTTCTTATGATTCTTTAGGCTGCATACGGCACTGCCGAGCTCATACTACAAATCCTTCTATAGAAGCAATAAGCTTAGACATGAAACAACAGGAGCTTGATGGCAGGTGCATTCAAATCAGGAATTTGCATAAAGTGTATGATACTAAAAAAGGAGATTGCTGTGCTGTTAACTCATTACAACTGACATTATATGAAAATCAGATTCTCGCTCTTCTAGGACATAATGGTGCTGGGAAAAGCACGACAATATCAATGCTTGTTGGTCTTCTTCCTCCTACTTCTGGGGATGCTTTGATTTTTTTTGGAAAGAACATTGTCTCTGATATTGATGAGATACGGAAGGTTTTGGGTGTCCGTCCACAACATGATATACTCTTTCCTGAATTGACCGTGAGAGAGCATTTAGAATTATTTGCTATATTAAAGGGTGTGGAGGAAGACACTCTGGAGAGCGTTATTATTAATATGGTTGATGAGGTGGGCCTGGCTGATAAAATCAACACTGTTGTGAGATCTCTTTCTGGTGGCATGAAGAGGAAGTTGTCTCTTGGAATCGCATTAGTTGGAAACAGTAAGGGCAGAATAATTTTGCTTACAACACATTCCATGGACGAAGCAGATGAACTAGGTGACCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCCCTTTTCTTGAAGCATCATTATGGAGTTGGTATGGGGCAAGATTGTGATGAAATGATCAACACTGATGGAAGCTTAGGCTACACTGTATTACCCACACTTTTTCTTGTCAGCANCACTGATGGAAGCTTAGGCTACACTGTATTACACAACTTTTCTTGTCAGCATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCAATTCTTGGGCTTGCTACTCATGACATGAATGCCACAATTCAGACACGCAACCACCCTCTACCAAAGACCAAAGCAACACGGAAACCTGCATTTTCACAACAGAAGCAAAAATCAACGGCAGGTCGTGGCATCTAA 1485 0.402 MIIMLGIFVLFLLQFKTKFATVIGFSLLMSGLLALQYFMKHQDLSAAYNKDATFSVQVFYATLTFTTVTVVLVLPWIMPMKTREMCSQWNLYMSASVPAEVHNMTPIFVLKDSLHVMGCVYITSWCLLQLLLQRPINAMPLLLLNVQILAYMLAFSSYDSLGCIRHCRAHTTNPSIEAISLDMKQQELDGRCIQIRNLHKVYDTKKGDCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALIFFGKNIVSDIDEIRKVLGVRPQHDILFPELTVREHLELFAILKGVEEDTLESVIINMVDEVGLADKINTVVRSLSGGMKRKLSLGIALVGNSKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGMGQDCDEMINTDGSLGYTVLPTLFLVSXTDGSLGYTVLHNFSCQHAAPTFINLMNSAILGLATHDMNATIQTRNHPLPKTKATRKPAFSQQKQKSTAGRGI* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0934 494 ProSitePatterns ABC transporters family signature. 329 343 IPR017871 GO:0005524
Psa6g0934 494 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 8 394 - -
Psa6g0934 494 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 193 430 IPR003439 GO:0005524
Psa6g0934 494 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 8 394 IPR026082 GO:0016021|GO:0055085|GO:0140359
Psa6g0934 494 Gene3D - 180 396 IPR027417 -
Psa6g0934 494 MobiDBLite consensus disorder prediction 477 494 - -
Psa6g0934 494 Pfam ABC transporter 213 348 IPR003439 GO:0005524
Psa6g0934 494 SMART AAA_5 221 376 IPR003593 -
Psa6g0934 494 MobiDBLite consensus disorder prediction 463 494 - -
Psa6g0934 494 CDD ABC_subfamily_A 193 387 - -
Psa6g0934 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 382 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0934 Psa-Chr6 35201820 35203916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0934 193 364 Calmodulin-binding Proteins AT2G36910 28.729 1.12e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0934 K05643 - gmx:100803263 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0934 6 35201820 35203916 Psa6g0934 6 35201820 35203916 ECH