Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0933 ATGATCACCGCTTACAACGGACGCTCCGCCTCCGGTGGAACCCGTACTCTGGTGGTTGGTGTCAAGATGGAAGAAGAATCACACTGTCACTGCTCGGAGTTACTGACTTGGGCGTTAGTTAACGTCGCTCAACCCGGTGATCTTATCGTTGCTCTTCATGTTCTTCCAAATCATGAGACTGTGAATAGAGATGGGAAATCTTCTTTGTTTTCTCTTGTTAAAGCATTTGATTCTGTTCTTTCTGGTTATGAAGGATTCTGTAATTTGAAACAGGTGGATCTGAAGCTTAAGATTTGCCGGGGTTCATCGGTGAGGAGAATTTTGGTTAGAGAAGCAAATGAATATTGTGCGACTCATGTTATACTTGGAACACCGCGAGGTTTTAGTAAAATTAGGCCATCTATTTCTATAGTTAGGTATTGTGCTAAGAAGCTATCTAAGGATTGTTGGGTTTTTGGTGTTGATAATGGAAAGGTTGTGTTCAAGAGAGATGGATCATCGTCTACAAATTGCGCCAATTTAAAAGGACATCAAGTTGGGTTGCTTGGTTCGATTCAATGGAAATTTGGCAAGAGTTCAAAAGTACTGAATGATGATATGCAATATTCGATATTGTCGGATTCATCTTGCTACCAAGCTGCAGATCAAGAGTTGTATGGCAGCGGTGATAGGGAGAACGAGAAGAACTCATTGGCTATGGTGCCTGTAAAGGTAACTGATGCTGGTTTGAGTATGAAAACTTTGCATTACAGAGAGGTGGCTGATTCGAAACCTGGTTGGCCACTACTACATAGCAGAATTTCATTGTCAGACAGGAGAAATTCTGAAAGATCGTCGTTTCCTCAGATTTCTGTGGTTCAATGGGCAATGCAGTTGCCCGCTAGAGATCTTTCCTATGATAAAGATCAGTTTTTGGGTCTAGATAGCAGAAGTGGGGCTCTTGTTCCGGTGGATGCTGAAATAGGGACGATTGCTTCACCAGAACGCAAATCCGTAAATGTTCCTAAAGAATTGGTGGGGCTTCATGAGAAATACTCATCTTCTTGTAGATTGTTTAAGTACGAAGAACTTGTATCGGCAACGTCAAATTTCTTGCCTGAAAATTTGATCGGAAAAGGAGGAAGTAGTGAGGTTTATAGAGGCTGTCTTCCTGATGGAAAGGAAGTTGCTGTTAAGATCTTAAAGCCTTCTGACGATGTTTTGAAGGAGTTTGTTTTAGAGATAGAAATTATCACTACTTTGCATCACATAAACATCATTTCCCTCGTTGGATTCTGCTTTGAAGATGACAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGGAGCCTTGAACATAACCTTCATGGTAGTAAGAAAAGTCTACTCGAGTTCGGTTGGACTGAGAGATATAAAGTGGCACTGGGTGTTGCCAACGCGTTGGAGTATCTGCATAATAATGGTGACAAAACTGTGATCCATCGCGATGTAAAATCATCAAATGTGTTATTATCCGAGGATTTTGAGCCTCAGCTGTCTGACTTTGGACTTGCTAAATGGGCATCATCCTCATCATCATACACAACCTGCACTGATGTTGCCGGAACTTTTGGTTACTTGGCTCCTGAATACTTCATGTATGGTAAAGTAAATGATAAGATTGATGTCTATGCATTTGGGGTGGTGCTTCTTGAGCTTCTCTCGGGGAGAAAGCCTATAAGTGGTGATTATCCTAAGGGTCAAGAGAGCCTTGTCATGTGGGCAAGTCCGATTCTGAATAGTGGGAAGCTGTCGCAATTGTTGGATCCTAGTTTGGGTGATAACTATGATCATGAAAAGATAGAAAGAATGGTCTTAGCAGCTACACTTTGTATCAGACGTGCTCCAGGAGCTAGGCCTCAAATGAGCCTTATCTCAAAGGTTCTTAAAGGTGATGCTGTAGTAATGAAGTGGGCAAGGTTAGAAATTAATGCATTGAAAGCTTCAGAGTTGCTTGATGAAGAAGCTTCTCCAACTTCTAACTTACGGTCACACCTAAATCTTGCACTGCTTGATGTGGAGGACGACGCACTCTCCTTGTGGAGTGTTGATCAAAATGTCTCTTTAGAGGACTACTTGAGAGGCAGGTGGAGCCGTTCATCTAGCTTTGATTGA 2133 0.4187 MITAYNGRSASGGTRTLVVGVKMEEESHCHCSELLTWALVNVAQPGDLIVALHVLPNHETVNRDGKSSLFSLVKAFDSVLSGYEGFCNLKQVDLKLKICRGSSVRRILVREANEYCATHVILGTPRGFSKIRPSISIVRYCAKKLSKDCWVFGVDNGKVVFKRDGSSSTNCANLKGHQVGLLGSIQWKFGKSSKVLNDDMQYSILSDSSCYQAADQELYGSGDRENEKNSLAMVPVKVTDAGLSMKTLHYREVADSKPGWPLLHSRISLSDRRNSERSSFPQISVVQWAMQLPARDLSYDKDQFLGLDSRSGALVPVDAEIGTIASPERKSVNVPKELVGLHEKYSSSCRLFKYEELVSATSNFLPENLIGKGGSSEVYRGCLPDGKEVAVKILKPSDDVLKEFVLEIEIITTLHHINIISLVGFCFEDDNLLLVYDFLSRGSLEHNLHGSKKSLLEFGWTERYKVALGVANALEYLHNNGDKTVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASSSSSYTTCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNSGKLSQLLDPSLGDNYDHEKIERMVLAATLCIRRAPGARPQMSLISKVLKGDAVVMKWARLEINALKASELLDEEASPTSNLRSHLNLALLDVEDDALSLWSVDQNVSLEDYLRGRWSRSSSFD* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0933 710 Gene3D Phosphorylase Kinase; domain 1 329 438 - -
Psa6g0933 710 CDD USP_Like 30 151 - -
Psa6g0933 710 Gene3D Transferase(Phosphotransferase) domain 1 439 654 - -
Psa6g0933 710 Pfam Protein kinase domain 368 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0933 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Psa6g0933 710 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Psa6g0933 710 SMART serkin_6 364 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0933 710 ProSiteProfiles Protein kinase domain profile. 364 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0933 710 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 10 704 - -
Psa6g0933 710 PANTHER OS01G0253100 PROTEIN 10 704 IPR045271 GO:0004714|GO:0006468
Psa6g0933 710 SUPERFAMILY Protein kinase-like (PK-like) 345 634 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0933 Psa-Chr6 35133450 35137586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0933 352 635 Trihelix Transcription Factor Family AT1G70460 45.675 2.56e-77 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa6g0933 Pkinase 6.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0933 - - aprc:113846853 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0933 6 35133450 35137586 Psa6g0933 6 35133450 35137586 ECH
Psa6g0933 6 35133450 35137586 Psa5g1417 5 109609171 109612386 PCT