Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0928 ATGGATAATAATAACCAACAATTCATGTTCCTTCCCTTTCTCCTCTTCTTCACCCTTTTCATAGCTACTACTCCTTCTGCTTCTTCTTCTGCATCATGTCCTATAGATCTCAGCTATGTTGAAACCTTTCCATGGGACACATCAACCTGCAGAGACCCAATTGACACAAACCACTGTTGTCAATCACTTCTTAGTCTCATTGGTATAGGCCTTGCAAAACACCTCAAAGAAACTCAACTCTTTCAATTCCCAAATGAAAACATTTCCTCAGCATGTTTACAAGATTTCAAACTCAAGCTTTCATCCTTAAAAATCCAACCTTTGTTAGTCCCTACTTGTTTCCCAAACTCTACTCAGTTTGTCACCAACACATCAAGCTGTGCAGGTATCTCAAACATCACAGATTGGAAACAAAAAGTTGGTATGATTACTCCTTTAGATACTTCTTGTAATGGTGATATGAAATCTGAAACCACTTGCAGCATGTGTACTGATGCTGGTTTCAAAGTAACTTCTCAGCTTACAGATATTGATCCAAAAAATTCAACTAAGTGTTTTTACTTTTCAATTTTGTATGCTATTGGTATTGTGAATCAGTTTGGTCCTACAGATCCTGCTGCAGCTGCTTGTATACTTGGTATGCCACTTTCATCAAAAGGGTCATCAGAATCAAACAATGGAAAAATTCTGAAACTTGTTTTTGGTTTATTGGGTGCTATTGTTGGTGTTGTTCTTGCTTTTGTGTTGATTATTATGTATAAAAAATGGGATAAGATGAGAAGGGAAAATCTTTATCACAGATCAGTTGAAAACAGTGTTAGAGACAGTGTTTTGCCTAATACAGGAGCTAAATGGTTTCACATATCAGAACTTGAAAAAGCTACAAACAAGTTTTCATTGAAGAATAAGATTGGTCAAGGTGGCGATGGTGTTGTGTACAAAGGAACACTTTCAGATGGAACTTTGGTAGCAGTGAAAGAAATATTTGATTTGGAAACTAGAGGAGATGAAGAGTTTTGTTATGAAGTTGAGATTATAAGCAAAATCAAGCATAGGTATCTTCTTGCTTTGAGAGGTTGTTGTGTTACAAGTCATAGTGTAAGAGGTAAAAGAAGGTTTTTGGTTTATGATTATATGCCGAATGGAAGTTTAAGTTATCAGCTATCAGTTAACGGTGCTAATAAGCTAACTTGGCCACAAAGGAAGAATATTATACTTGATGTAGCTAAAGGGCTAGCTTATCTGCATTACGAAATCAAGCCGCCGATTTTTCATCGCGATATCAAGGCGACGAATATACTTTTGGACTCGAAAATGAAAGCGAAGGTCGCTGATTTCGGATTAGCGAAACAAGGTAATGAAGGACAGTCTCATCTAACAACAAGAGTGGCAGGAACATATGGTTATTTAGCACCTGAGTATGCATTATATGGACAACTAACAGAAAAAAGTGATGTTTATAGTTTTGGTATAGTGATACTTGAGGTAATGAGTGGTAGAAAAGTGCTTGATACAATGAATTCACCTGTTGTTTTGATAACTGATTGGGCTTGGTCACATGCAAAATCAGGAAAAGTTGATGAGATATTTGATGAATCAATTAGAGATGAAGGGCCAGAGAAAATCATGGAAAGGTTTGTGCTTGTTGGAATTCTTTGTGCTCATGCAATGGTTGCATTGAGGCCTACTATTGCTGAGGCACTTAAGATGTTGGAAGGTGATATTGATATTCCTAATTTGCCTGATAGGCCTGTGCCACTTGGTCATGAATCTTTTCAATCTTCTCTTTTGAATGGTATGCAACAAAGTGGAAGATCAACACCTTTTACTTCATTTTATTCTTCAACTATGAGTACAATTAGTAGAAATTGA 1872 0.3659 MDNNNQQFMFLPFLLFFTLFIATTPSASSSASCPIDLSYVETFPWDTSTCRDPIDTNHCCQSLLSLIGIGLAKHLKETQLFQFPNENISSACLQDFKLKLSSLKIQPLLVPTCFPNSTQFVTNTSSCAGISNITDWKQKVGMITPLDTSCNGDMKSETTCSMCTDAGFKVTSQLTDIDPKNSTKCFYFSILYAIGIVNQFGPTDPAAAACILGMPLSSKGSSESNNGKILKLVFGLLGAIVGVVLAFVLIIMYKKWDKMRRENLYHRSVENSVRDSVLPNTGAKWFHISELEKATNKFSLKNKIGQGGDGVVYKGTLSDGTLVAVKEIFDLETRGDEEFCYEVEIISKIKHRYLLALRGCCVTSHSVRGKRRFLVYDYMPNGSLSYQLSVNGANKLTWPQRKNIILDVAKGLAYLHYEIKPPIFHRDIKATNILLDSKMKAKVADFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEVMSGRKVLDTMNSPVVLITDWAWSHAKSGKVDEIFDESIRDEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPNLPDRPVPLGHESFQSSLLNGMQQSGRSTPFTSFYSSTMSTISRN* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0928 623 PANTHER OS01G0253100 PROTEIN 21 601 IPR045271 GO:0004714|GO:0006468
Psa6g0928 623 Pfam SPARK 28 186 IPR043891 -
Psa6g0928 623 ProSiteProfiles Protein kinase domain profile. 298 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0928 623 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 21 601 - -
Psa6g0928 623 Gene3D Phosphorylase Kinase; domain 1 259 378 - -
Psa6g0928 623 CDD STKc_IRAK 304 573 - -
Psa6g0928 623 Gene3D Transferase(Phosphotransferase) domain 1 379 577 - -
Psa6g0928 623 SMART serkin_6 298 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0928 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Psa6g0928 623 SUPERFAMILY Protein kinase-like (PK-like) 283 591 IPR011009 -
Psa6g0928 623 Pfam Protein kinase domain 299 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0928 Psa-Chr6 34924713 34927111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0928 26 601 Receptor kinase-like Gene Family AT1G11050 51.907 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Psa6g0928 Pkinase 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0928 - - ccaj:109788171 971.844