Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0920 ATGGAGCATGGAAATCACTCATTTAACCATGGTCGTTCCACACAATCAAGCTCAGGTAATGAAACAAACACTGAAAACGTCAACAACAATATTGATACTGGAATTGATAACCAATATTTACAAGGAACAATGGATGAGGAAATACATATACCCATGAAGAATGTGACAAGAATCATGCAGTGGGCTATTCCCCGGGATGGAAGAATCTCTAAGGATGCCAAGGAGTCAACTCAATTGTGTCTGACTGAATTTATGAACATCATCACAAACGAGGCCAATGAGCGTTGTAAGGCACAAAGCCGAAAAATCATTAGCGGTGAAGATTTAATATGGGCCATGGATAGGTTGGGCTTTGAGGACTATGTTGGTCCTCTTCTTTTATACCATCAAAAATATCTCAACCATGAGGCTCAACTCAATACCATGAGGTTCAACAAAGATATTTCAGGTGCTAGTGGCTCGAACAATGGTGGTGATAATGGCCATAACTGA 492 0.4024 MEHGNHSFNHGRSTQSSSGNETNTENVNNNIDTGIDNQYLQGTMDEEIHIPMKNVTRIMQWAIPRDGRISKDAKESTQLCLTEFMNIITNEANERCKAQSRKIISGEDLIWAMDRLGFEDYVGPLLLYHQKYLNHEAQLNTMRFNKDISGASGSNNGGDNGHN* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0920 163 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 20 143 IPR027113 GO:0001228|GO:0006355|GO:0016602
Psa6g0920 163 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Psa6g0920 163 SUPERFAMILY Histone-fold 46 152 IPR009072 GO:0046982
Psa6g0920 163 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 20 143 - -
Psa6g0920 163 MobiDBLite consensus disorder prediction 1 22 - -
Psa6g0920 163 Gene3D Histone, subunit A 39 156 IPR009072 GO:0046982
Psa6g0920 163 MobiDBLite consensus disorder prediction 8 22 - -
Psa6g0920 163 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Psa6g0920 163 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Psa6g0920 163 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0920 Psa-Chr6 34616237 34617992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0920 43 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 49.495 1.23e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa6g0920 CBFD_NFYB_HMF 2.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0920 K08065 - bvg:104890715 110.923