Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0911 ATGGTGCCTCCGGGGCCACCCACTCCTATTGGTGGTGCCCAATCTGCGTCGCCTTCACTTATGAGATCGAATTCGGGGATGATGGGGGGTCAAGGTGGACAAGCTTCATTTCCTTCGCTGGTTTCTCAGCGAAATCAGTATAATAACATGAACATGTTAGGCAACATGTCTAATGTTGCTTCCATGATGAATCAGTCTTTTTCCAATGGGATTCCGAACTCGGGACTCGGTGGATTGGGAAATAGTCAACGGGGTGGTATGGATGCTGGGGCTGAACAGGACCCTTTGTCTGGTGTTGGCAATGGAATGGGATTTGGTAATCCTTCCTCGTCGTTTGGGCAATCAAATATGGCTAACTCTGGTTCATCTGGTCAAGGACAAGGTCAGGGTCAGCAATTTTCAAACCCTTCTGGTAACCAGTTGCTGTCGGATCAACAGCATTCCCAACAACTCGACGCCCAAAATTTCCAGCATGGTCAGCAGCAGTCAGCGCAGCAGTTTTCGGCTCCAATGAACTCTCAACAACAACAACATCAGCAACAACAACATTTTCAATCCATGCGGGGAGGTATAGGTGGCATTGGACCTGTGAAGATGGAGCCTCAGGGAAACAACGATCAGTTTGGGCAGCAGTTGCCATCACTGAGGAATCTTGCTCAGGTGAAATTGGAACCGCAACAACTTCAATCAATGAGAGGTATGGCACCTGTAAAAATGGAGCCCCAGCATAGTGATCAACCATTTTTGCATCAACAGCAACAACAGCAGCAGCAACAACTCCTCCACATGTCAAGGCAAACCTCTCAGGCTACTGCTGCACAGATGAATCTTTTGCAACAGCAGAGACTTTTGCAATATCAACAACAGCAGCAACATCAGCAGCAGCAACTCTTAAAGTCAATGCCTCAGCAGCAACGGTCCCAGCTACCGCAACAGTTTCAGCAGCAGAATATGCCTATAAGGTCTCCTGTGAAACCAGCATATGAACCTGGGATGTGTGCTAGGCGGCTGACACATTACATGTATCAGCAACAACATAGACCCGAAGATAACAACATTGATTTCTGGAGGAAATTTGTTGCCGAGTATTTTGCTCCTAATGCCAAAAAGAAGTGGTGCGTTTCCATGTATGGAAGTGGCAGACAAACAACTGGAGTTTTCCCTCAGGATATATGGCACTGTGAAATATGTAACCGCAAACCTGGTCGTGGGTTTGAGGCAACTGCTGAAGTTCTTCCCAGGCTTTTCAAAATAAAGTATGAAAGTGGTACTTTAGAAGAGCTCTTGTATGTTGACATGCCTCGTGAATATCATAATTCCTCTGGCCAGATTGTTCTAGATTATGCCAAAGCAATACAAGAAAGTGTTTTTGAGCAACTCCGCGTTGTCCGGGATGGCCAACTTCGAATAGTTTTCTCTCCAGACCTGAAGATATGTTCTTGGGAATTTTGTGCTCGGCGTCATGAAGAGCTCATCCCCAGAAGATTGTTAATTCCTCAGGTTAGTCAGCTTGGAGCAGTTGCTCAAAAATATCAGGCATGTACACAAAATGCAGCACCCAATCTATCCATTCCAGAGTTACAAAATAATTGCAATTTGTTTGTTGCATCAGCCCGTCAGTTGGCAAAAGCCTTGGAAGTTCCATTGGTTAATGATTTAGGATACACAAAGAGATATGTGCGGTGCCTACAAATATCAGAAGTGGTAAATAGTATGAAAGACTTGATAGATTATAGCAGAGAAACAGGAACTGGACCTATGGACAGCTTGTCCAAATTCCCTCGGAGAACAAGTAATTCATCTGCACTTCATAGTCAGGCGCAACAGTCTGAAGATCAATTACAGCAGCAACAACAGCATATGGCGTCCCATAACTCAAATGGTGATCAGAACTCTGTGCAAGCTGCTGCCATGCAAATTCCTTCTAACAATGGTGTGGCAAATGTAAATAACAATGTCAATTCAGCATCTGCATCGACTACCACAAGCACCATTGTTGGACTTCTCCACCAGAACTCTATGAATGCTAGGCAGCAAAATTCAATGAACAATGCAAGCAGTCCATATGGAGGTAATTCTTCCCATATTCCATCCCCAGGTTCATGCAATACAGTGCCACAAACGCAACCAAACTCGTCCCCTTTTCATTCACCGACACCGTCCTCCTCTAACAACCCACAAAATTCTCACCCAGGCATAACATCTGCAAATCACATGGGTACAGCAAACTCACCAGCTAATATTTCCTTGCAACAACAAAACCAGACGTCTATTTCTGGTGAAGGTGACCCTAGTAACGATGCACAGAACTCGGTCCAGAAAATCATTCATGAGATGATGATGTCCTCCCAGATGAACGGAACAGGCGGAATGGTAGGTGCCAATTCTCTTGGAAATGACATGAAGAATGTAAATGGTATCCTACCAGGGAGTACTAACACTGGCCTCAACGGTGGCAATGGCATGATGGGTAATGGAGGTGTGAACAGTAATCCTGGTGTCGGGGGTTATGGCACAATGGGTCTTGGTCCATCTGGTTTACCCAATGGAATGAGGCCAGGAATGGGAAATAATTCAGTCATGAACGGGAGAGGAGGAATGACATCGCTTACTCGGGAACAGGCTATGAATCATCAACAGGACTTGTCAAGCCAACTACTTAGTGGGTTAGGAGCAGTAAATGGTTTCAATAATCTTCAATTTGATTAG 2709 0.4518 MVPPGPPTPIGGAQSASPSLMRSNSGMMGGQGGQASFPSLVSQRNQYNNMNMLGNMSNVASMMNQSFSNGIPNSGLGGLGNSQRGGMDAGAEQDPLSGVGNGMGFGNPSSSFGQSNMANSGSSGQGQGQGQQFSNPSGNQLLSDQQHSQQLDAQNFQHGQQQSAQQFSAPMNSQQQQHQQQQHFQSMRGGIGGIGPVKMEPQGNNDQFGQQLPSLRNLAQVKLEPQQLQSMRGMAPVKMEPQHSDQPFLHQQQQQQQQQLLHMSRQTSQATAAQMNLLQQQRLLQYQQQQQHQQQQLLKSMPQQQRSQLPQQFQQQNMPIRSPVKPAYEPGMCARRLTHYMYQQQHRPEDNNIDFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDIWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAVAQKYQACTQNAAPNLSIPELQNNCNLFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMDSLSKFPRRTSNSSALHSQAQQSEDQLQQQQQHMASHNSNGDQNSVQAAAMQIPSNNGVANVNNNVNSASASTTTSTIVGLLHQNSMNARQQNSMNNASSPYGGNSSHIPSPGSCNTVPQTQPNSSPFHSPTPSSSNNPQNSHPGITSANHMGTANSPANISLQQQNQTSISGEGDPSNDAQNSVQKIIHEMMMSSQMNGTGGMVGANSLGNDMKNVNGILPGSTNTGLNGGNGMMGNGGVNSNPGVGGYGTMGLGPSGLPNGMRPGMGNNSVMNGRGGMTSLTREQAMNHQQDLSSQLLSGLGAVNGFNNLQFD* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0911 902 Pfam LIM-domain binding protein 336 590 IPR029005 -
Psa6g0911 902 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 902 - -
Psa6g0911 902 MobiDBLite consensus disorder prediction 586 632 - -
Psa6g0911 902 MobiDBLite consensus disorder prediction 239 267 - -
Psa6g0911 902 MobiDBLite consensus disorder prediction 245 267 - -
Psa6g0911 902 Coils Coil 607 627 - -
Psa6g0911 902 MobiDBLite consensus disorder prediction 687 728 - -
Psa6g0911 902 MobiDBLite consensus disorder prediction 140 185 - -
Psa6g0911 902 PANTHER LIM DOMAIN-BINDING PROTEIN 1 902 IPR029005 -
Psa6g0911 902 MobiDBLite consensus disorder prediction 591 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0911 Psa-Chr6 34333694 34343311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0911 1 808 C2H2 Transcription Factor Family AT1G43850 58.953 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0911 - - gmx:100798031 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0911 6 34333694 34343311 Psa6g0911 6 34333694 34343311 ECH