Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0909 ATGACTGTGAGTACTAATCAGCAAGAGAAGTTTGTTAGGTTTCAGGATTCTAATTCAGAGAAGGTTTCTGAGAGAATTCATTCTGCATTTGAGCCAACACAGCCAGGGAAATTTAGAAGCACATTAAGTTCATTTTCTGAGAAGTTTCAAAGGGGATTGGAATCTGGTTCTGAAAGGATGATGAGGTTCAGAACAACATTCGACTCTTTTCACCATAACAGTGCTCTTTCTAGAAACTTTGGCTCTAAAAGGAAAATACTTGATCCACAAGGTTCATTCCTTCAAAAGTGGAACAAGATATTTGTATTGTTGTGTGTCATTGCTGTATCACTAGATCCGTTGTTCTTTTATGTTCCCGTGATTGATGGTGAGAAGAAATGCCTTTCACTGGACAGAGGGATGGAGATTACAGCGACTTTTTTGAGAACTTTCTCTGATGTATTTTATATAATCCACATGATTTTCCAGTTTCGTACTGGATTTATTGCTCCCTCTTCCCGAGTTTTTGGAAGAGGTGTTTTGGTAGAAGATTCTTGGGCAATTGCTAAGAGATATCTGTCATCATATTTCTTAGTTGACATTCTTGCAATTCTTCCCCTCCCACAGGTGGTCATTCTAGTTATCATCCCGAAGATGAGTGGCTTTGAATCACTCAATACAAAGAACTTGCTGAAATTTGTTGTTTTCTTCCAATATATGCCTCGACTATTACGAATAATTCCATTATATAAAGAAATTACAAGGACCTCTGGCATTCTCACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTATATGCTTGCAAGTCATGTCCTTGGTGCCTTTTGGTACTTGTTTTCCATAGAACGAGAAACCACATGCTGGCAAGAAGCCTGTCGAAGTAATGTCATGTGTAACAAGGCAGATATGTATTGTAATGATCATGGGGGCGGGTTTAAGACAATTTCAACATATTTGAATACTTCTTGCCCAATACTGGAGGAAGATAAAAAGCAATTTGATTTTGGAATTTTCCTTGACGCCCTTCAATCCGGTGTTGTGGAGTCGAGAGATTTTACCCAAAAACTCTTCTACTGTTTTTGGTGGGGCCTAAAAAATTTGAGTTCTCTTGGTCAGAACCTAGCAACAAGTACCGATTTTTGGGAAATCTGTTTCGCAGTTTTCATTTCCATAGCTGGTTTGGTTTTATTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACAACCAGATTGGAGGAGATGAGAGTAAAAAGGAGGGATGCAGAACAATGGATGTCTCATCGATTGCTTCCTGACAGCCTGAGAGAGCGAATCAGGCGGTATGATCAATACAAATGGCAAGAAACCAGGGGTGTAGATGAAGATCGTTTAATTCACGATCTTCCCAAAGATTTAAGAAGGGATATTAAGCGTCATCTTTGCTTAGATTTGCTGATGAGGGTGCCAATGTTTGAGAAAATGGATGGACAACTTTTGGATGCAATGTGTGACCGTCTCAAACCAATACTTTATACAGAACAAAGCTACGTTGTTCGGGAAGGAGACCCCGTTGATGAGATGCTCTTCATAATGCGAGGCAAGCTGTTGACTATAACAACTAACGGCGGTAGAACTGGCTTCTTCAACTCTGAGTTCTTAAAAGCTGGCGACTTCTGTGGAGAGGAGCTTCTCACATGGGCCCTAGATCCTCATTCCTCATCCAACCTTCCCATTTCAACTAGGACGGTCCAAACCATCTTAGAAGTCGAAGCCTTTGCCCTAAAAGCTGACGATCTGAAGTTCGTGGCGTCTCAGTTCCGGCGTCTTCACAGCAAGAAGCTGCGCCACACTTTCAGATTCTACTCGCAACAATGGCGTACATGGGCTGCATGTTTTATACAAGCTGCATGGCGGCGCTACTGCAAGAAGAAGCTTGAAGAGTCTCTCATTGAAGAGGAGAACAGGCTGCAAGATGCGTTGGCAAAGGCTGGTGGTACCTCAACAAGTCTAGGTGCCACCATATATGCTTCTAGGTTTGCTGCCAATGCACTCAGATTATTGCGACGAAATCGCACTGCAAGGAAGATTAGGGTGCCAGAGAGAATACCTGCTTTGTTGCTTCAGAAACCTGAAGAACCTGACTTTACTGAGGAAGAACAATAG 2163 0.4175 MTVSTNQQEKFVRFQDSNSEKVSERIHSAFEPTQPGKFRSTLSSFSEKFQRGLESGSERMMRFRTTFDSFHHNSALSRNFGSKRKILDPQGSFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDGEKKCLSLDRGMEITATFLRTFSDVFYIIHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIAKRYLSSYFLVDILAILPLPQVVILVIIPKMSGFESLNTKNLLKFVVFFQYMPRLLRIIPLYKEITRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSIERETTCWQEACRSNVMCNKADMYCNDHGGGFKTISTYLNTSCPILEEDKKQFDFGIFLDALQSGVVESRDFTQKLFYCFWWGLKNLSSLGQNLATSTDFWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRYDQYKWQETRGVDEDRLIHDLPKDLRRDIKRHLCLDLLMRVPMFEKMDGQLLDAMCDRLKPILYTEQSYVVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTILEVEAFALKADDLKFVASQFRRLHSKKLRHTFRFYSQQWRTWAACFIQAAWRRYCKKKLEESLIEEENRLQDALAKAGGTSTSLGATIYASRFAANALRLLRRNRTARKIRVPERIPALLLQKPEEPDFTEEEQ* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0909 720 Coils Coil 642 662 - -
Psa6g0909 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 9 718 - -
Psa6g0909 720 CDD CAP_ED 490 621 IPR000595 -
Psa6g0909 720 Gene3D Jelly Rolls 488 608 IPR014710 -
Psa6g0909 720 SUPERFAMILY cAMP-binding domain-like 419 612 IPR018490 -
Psa6g0909 720 ProSiteProfiles cAMP/cGMP binding motif profile. 490 574 IPR000595 -
Psa6g0909 720 Gene3D - 81 414 - -
Psa6g0909 720 Gene3D Helix hairpin bin 416 481 - -
Psa6g0909 720 Pfam Ion transport protein 97 417 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa6g0909 720 SUPERFAMILY Voltage-gated potassium channels 88 412 - -
Psa6g0909 720 SMART cnmp_10 490 621 IPR000595 -
Psa6g0909 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 9 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0909 Psa-Chr6 34215737 34223027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0909 7 719 Ion Channels AT5G53130 75.838 0.0 1107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0909 K05391 - gmx:100801032 1197.96